EBG00000313339 - n.1998T>C
Drug resistance types
15 Sensitive
1 RR-TB
13 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
14 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 2 |
| M.canetti;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage1.1.2 | 2 |
| lineage4.9 | 9 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| La3;M.canetti | 8 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 46 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22424765 | HR-TB | lineage4.8 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR2100403 | Other | lineage1.1.2 | None | ERR3283042 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR1043163 | Other | La3;M.canetti | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None |
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