EBG00000313339 - n.871T>A
Drug resistance types
14 Sensitive
15 RR-TB
6 HR-TB
16 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 4 |
| lineage2.2.1.1 | 2 |
| lineage4.2.2.2 | 2 |
| lineage4.9 | 14 |
| lineage4.1.1.1 | 2 |
| lineage4.8 | 6 |
| lineage4.2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1 | 18 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2.1 | 2 |
| La1.3 | 1 |
| lineage2.2.2 | 2 |
| lineage4.3.1.1 | 2 |
| lineage4.2.1 | 3 |
| lineage1.1.1.1 | 1 |
| lineage4.6 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage3 | 8 |
| lineage6.1.3 | 1 |
| lineage6.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.4.2 | 1 |
| La3;lineage4.9 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage4.8.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1238559 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR867573 | Other | lineage4.9 | None | DRR188816 | Other | lineage4.2.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR4769436 | Other | La1.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR18002908 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6044936 | Other | lineage4.6 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR7585400 | MDR-TB | lineage3 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR867544 | Other | lineage4.9 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR7070223 | HR-TB | lineage3 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675527 | Other | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046020 | Other | lineage3 | None | ERR133816 | MDR-TB | lineage2.2.1 | None | SRR7069030 | Other | lineage3 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9117788 | Other | lineage3 | None | ERR10796577 | Other | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6044904 | Other | lineage3 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR1238558 | Other | lineage4.9 | None | SRR5007165 | Other | lineage3 | None | ERR323048 | Sensitive | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | ERR10796635 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796564 | Other | lineage4.3.3 | None |
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