Run ID: ERR4816907
Sample name:
Date: 01-04-2023 14:42:05
Number of reads: 3452010
Percentage reads mapped: 96.5
Strain: lineage1.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 1.0 |
lineage1.1.1 | Indo-Oceanic | EAI4;EAI5 | RD239 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4407851 | c.351delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 6439 | c.-863C>G | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7853 | c.552C>T | synonymous_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302898 | c.-33G>A | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472123 | n.278A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472535 | n.690C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472557 | n.712G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472974 | n.1129A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474355 | n.698A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474393 | n.736A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474402 | n.745T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474501 | n.844A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474558 | n.901G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474581 | n.924C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476187 | n.2530T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476207 | n.2550T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476548 | n.2891T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476563 | n.2906G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834300 | c.759G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167983 | p.Gly877Asp | missense_variant | 1.0 |
PPE35 | 2169149 | c.1464G>A | synonymous_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223124 | p.Leu14Arg | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064632 | c.1560C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448378 | c.-126_-125insG | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
Rv3083 | 3448966 | p.Gly155Cys | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474342 | c.336G>A | synonymous_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
clpC1 | 4040857 | c.-153C>T | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338242 | p.Gln94Glu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |