Rv0006 - c.552C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
137 Sensitive
0 RR-TB
16 HR-TB
17 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 73 |
| lineage1.1.1 | 115 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| La1.7;lineage4.9 | 8 |
| La1.7 | 2 |
| lineage4.8 | 1 |
| La3;lineage4.9 | 4 |
| lineage4 | 4 |
| lineage2.2.1 | 5 |
| lineage4.3.4.1 | 1 |
| lineage3 | 1 |
| lineage4.3.4.2 | 6 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 240 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR363453 | Sensitive | lineage4.9 | None | SRR7131254 | Sensitive | lineage1.1.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR22251640 | Other | lineage1.1.1 | None | ERR10680205 | MDR-TB | lineage1.1.1 | None | SRR12882493 | Sensitive | lineage1.1.1 | None | ERR369158 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR998720 | Sensitive | lineage1.1.1 | None | SRR11342380 | Sensitive | lineage1.1.1 | None | ERR3324333 | Sensitive | lineage1.1.1 | None | ERR3324361 | Sensitive | lineage1.1.1 | None | ERR3803988 | Sensitive | lineage1.1.1 | None | ERR3804112 | Sensitive | lineage1.1.1 | None | ERR3806597 | Other | lineage1.1.1 | None | ERR3803970 | Sensitive | lineage1.1.1 | None | ERR3803780 | Sensitive | lineage1.1.1 | None | ERR3806609 | Sensitive | lineage1.1.1 | None | ERR3806648 | Sensitive | lineage1.1.1 | None | ERR9786017 | Sensitive | lineage1.1.1 | None | ERR9786015 | Sensitive | lineage1.1.1 | None | ERR9786019 | Sensitive | lineage1.1.1 | None | ERR9786022 | Sensitive | lineage1.1.1 | None | ERR9786023 | Other | lineage1.1.1 | None | ERR552093 | Sensitive | lineage1.1.1 | None | ERR552094 | Sensitive | lineage1.1.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4799025 | Other | lineage4.8 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR2027214 | MDR-TB | lineage1.1.1 | None | ERR7902666 | Sensitive | lineage1.1.1 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR552093_ERR552094 | Sensitive | lineage1.1.1 | None | ERR11068460 | Sensitive | lineage1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769450 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR9786012 | Sensitive | lineage1.1.1 | None | SRR22251355 | Sensitive | lineage1.1.1 | None | SRR21691096 | Sensitive | lineage1.1.1 | None | SRR19115675 | Sensitive | lineage1.1.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR3804037 | Sensitive | lineage1.1.1 | None | ERR10465854 | Sensitive | lineage1.1.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR7902747 | HR-TB | lineage1.1.1 | None | ERR4815325 | Other | lineage1.1.1 | None | ERR12268357 | Sensitive | lineage1.1.1 | None | ERR10465992 | HR-TB | lineage1.1.1 | None | ERR11068451 | Sensitive | lineage1.1.1 | None | SRR18289194 | Sensitive | lineage1.1.1 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR11050953 | Sensitive | lineage1.1.1 | None | ERR4195427 | Sensitive | lineage4.3.4.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4821402 | Sensitive | lineage4.3.3 | gb | SRR6046878 | Other | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR047884 | MDR-TB | lineage1.1.1 | gb | ERR234194 | Sensitive | lineage1.1.1 | None | ERR047880 | MDR-TB | lineage1.1.1 | ru | SRR12882494 | Sensitive | lineage1.1.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR7070405 | Sensitive | lineage1.1.1 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR10680024 | MDR-TB | lineage1.1.1 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR998723 | Sensitive | lineage1.1.1 | None | ERR2679252 | MDR-TB | lineage1.1.1 | None | ERR2679299 | Sensitive | lineage1.1.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR3801359 | Sensitive | lineage1.1.1 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR9786021 | Sensitive | lineage1.1.1 | None | ERR9786030 | Sensitive | lineage1.1.1 | None | ERR11043725 | Sensitive | lineage1.1.1 | None | ERR3803976 | Sensitive | lineage1.1.1 | None | ERR552800_ERR552799 | Sensitive | lineage1.1.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR16370298 | Other | lineage1.1.1 | None | SRR12882496 | HR-TB | lineage1.1.1 | None | SRR29053588 | Other | lineage1.1.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR363449 | Sensitive | lineage4.9 | None | SAMN02231137 | Sensitive | lineage1.1.1 | None | ERR2679251 | Sensitive | lineage1.1.1 | None | ERR752229 | Other | lineage4.5 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR4195261 | Other | lineage4.3.4.2 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9121267 | Other | lineage4.3.4.2 | None | ERR9121248 | Other | lineage4.3.4.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR10680173 | MDR-TB | lineage1.1.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR1367683 | HR-TB | lineage4.3.4.2 | None | SRR18289203 | Sensitive | lineage1.1.1 | None | ERR4811385 | Sensitive | lineage1.1.1 | None | ERR4811453 | Other | lineage1.1.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR439975 | Sensitive | lineage1.1.1 | None | ERR2679279 | MDR-TB | lineage1.1.1 | None | ERR550994 | Sensitive | lineage1.1.1 | None | ERR1334050 | Sensitive | lineage1.1.1 | gh | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR7902593 | Sensitive | lineage1.1.1 | None | ERR369162 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR10680016 | MDR-TB | lineage1.1.1 | None | ERR10680103 | MDR-TB | lineage1.1.1 | None | ERR4816907 | Other | lineage1.1.1 | None | SRR6046210 | Other | lineage4.9 | None | ERR3801609 | Sensitive | lineage1.1.1 | None | ERR3803816 | Sensitive | lineage1.1.1 | None | ERR9786006 | Sensitive | lineage1.1.1 | None | ERR9786010 | Sensitive | lineage1.1.1 | None | ERR9786007 | Sensitive | lineage1.1.1 | None | ERR9786014 | Sensitive | lineage1.1.1 | None | ERR9786016 | Sensitive | lineage1.1.1 | None | ERR9786013 | Sensitive | lineage1.1.1 | None | ERR9786024 | Sensitive | lineage1.1.1 | None | ERR552799 | Sensitive | lineage1.1.1 | None | ERR552800 | Sensitive | lineage1.1.1 | None | ERR7902697 | MDR-TB | lineage1.1.1 | None | SRR12882040 | Sensitive | lineage1.1.1 | None | ERR7902729 | HR-TB | lineage1.1.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR3799585 | Sensitive | lineage1.1.1 | None | SRR7069808 | Sensitive | lineage1.1.1 | None | ERR9786018 | Sensitive | lineage1.1.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR3275772 | Sensitive | lineage1.1.1 | nl | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821368 | Other | lineage1.1.1 | None | ERR4829278 | Sensitive | lineage1.1.1 | None | ERR13267586 | Sensitive | lineage1.1.1 | None | ERR10680212 | MDR-TB | lineage1.1.1 | None | SRR29127058 | Sensitive | lineage1.1.1 | None | ERR117618 | Pre-XDR-TB | lineage1.1.1 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR29126756 | Sensitive | lineage1.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR9117823 | Sensitive | lineage1.1.1 | None | SRR998722 | Sensitive | lineage1.1.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR10680047 | MDR-TB | lineage1.1.1 | None | ERR10680184 | MDR-TB | lineage1.1.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR9786020 | Sensitive | lineage1.1.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR13289988 | Sensitive | lineage1.1.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR12882492 | HR-TB | lineage1.1.1 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR1367686 | Other | lineage4.3.4.2 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7236414 | Other | La1.8.1 | None | ERR4829126 | MDR-TB | lineage1.1.1 | ng | ERR028332 | Sensitive | lineage1.1.1 | None | ERR10680221 | MDR-TB | lineage1.1.1 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR7902716 | Sensitive | lineage1.1.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR998721 | Sensitive | lineage1.1.1 | None | SAMEA2534408 | Sensitive | lineage1.1.1 | None | SAMEA2534913 | Sensitive | lineage1.1.1 | None | ERR553258 | Sensitive | lineage1.1.1 | None | ERR2514061 | Sensitive | lineage1.1.1 | gb | SRR6045746 | Sensitive | lineage1.1.1 | gb | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR18289193 | Other | lineage1.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR10679991 | MDR-TB | lineage1.1.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675222 | Other | La1.7 | None |
|---|
