Rv0006 - c.552C>T
Drug resistance types
175 Sensitive
2 RR-TB
40 HR-TB
16 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1 | 92 |
| lineage4.1 | 2 |
| 39 | |
| lineage4.9 | 51 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4 | 67 |
| lineage4;lineage2.2 | 1 |
| lineage4.1.2.1 | 4 |
| lineage3 | 2 |
| lineage4.2.1 | 2 |
| lineage4.1.3 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1 | 4 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2 | 6 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| lineage4.5 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 283 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11050953 | Sensitive | lineage1.1.1 | None | ERR11068460 | Sensitive | lineage1.1.1 | None | ERR552094 | Sensitive | lineage1.1.1 | None | ERR11068451 | Sensitive | lineage1.1.1 | None | ERR552093 | Other | lineage1.1.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR552799 | Sensitive | lineage1.1.1 | None | ERR552800 | Sensitive | lineage1.1.1 | None | SRR3675222 | Other | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | ERR4815325 | Other | lineage1.1.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675279 | Other | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR2027214 | MDR-TB | lineage1.1.1 | None | ERR212138 | HR-TB | lineage4 | None | ERR3275772 | Sensitive | lineage1.1.1 | nl | SRR5341323 | Sensitive | lineage4 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816907 | Other | lineage1.1.1 | None | ERR4817998 | Other | lineage3 | None | ERR234194 | Sensitive | lineage1.1.1 | None | ERR4819051 | Other | lineage4 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5341396 | Other | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR553258 | Sensitive | lineage1.1.1 | None | SAMEA2534913 | Sensitive | lineage1.1.1 | None | SRR5341456 | Other | None | ERR2514061 | Sensitive | lineage1.1.1 | gb | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2679279 | MDR-TB | lineage1.1.1 | None | ERR2679251 | Sensitive | lineage1.1.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR2679252 | MDR-TB | lineage1.1.1 | None | SRR6045746 | Sensitive | lineage1.1.1 | gb | ERR2679299 | Sensitive | lineage1.1.1 | None | ERR2679308 | Sensitive | lineage4.1.3 | None | ERR4821402 | Other | lineage4.3.3 | gb | ERR4821368 | Other | lineage1.1.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046046 | Other | None | SAMEA2534408 | Sensitive | lineage1.1.1 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR4829126 | MDR-TB | lineage1.1.1 | ng | SRR6046299 | HR-TB | None | ERR4829278 | Sensitive | lineage1.1.1 | None | SRR6046492 | Other | None | ERR4830353 | Other | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831743 | HR-TB | lineage4.1.2.1 | None | ERR4831638 | Sensitive | None | SRR998720 | Sensitive | lineage1.1.1 | None | SRR998722 | Sensitive | lineage1.1.1 | None | ERR550994 | Sensitive | lineage1.1.1 | None | SRR7131254 | Sensitive | lineage1.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR998723 | Sensitive | None | SRR998721 | Sensitive | lineage1.1.1 | None | ERR047880 | MDR-TB | lineage1.1.1 | ru | ERR047884 | MDR-TB | lineage1.1.1 | gb | ERR028332 | Sensitive | lineage1.1.1 | None | ERR10680103 | MDR-TB | lineage1.1.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR10465854 | Sensitive | lineage1.1.1 | None | ERR10465992 | HR-TB | lineage1.1.1 | None | ERR10680173 | MDR-TB | lineage1.1.1 | None | ERR10680184 | MDR-TB | lineage1.1.1 | None | ERR10680205 | MDR-TB | lineage1.1.1 | None | ERR10680221 | MDR-TB | lineage1.1.1 | None | ERR10680212 | MDR-TB | lineage1.1.1 | None | ERR1367683 | HR-TB | lineage4.3.4.2 | None | ERR1334050 | Sensitive | lineage1.1.1 | gh | ERR108471 | HR-TB | lineage4 | None | ERR11043725 | Sensitive | lineage1.1.1 | None | ERR117618 | Pre-XDR-TB | lineage1.1.1 | None | ERR1367686 | Sensitive | lineage4.3.4.2 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR363421 | Sensitive | lineage4 | None | ERR3283031 | HR-TB | None | ERR3324361 | Sensitive | lineage1.1.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR3283028 | Other | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3324333 | Sensitive | lineage1.1.1 | None | ERR3445504 | HR-TB | None | ERR363453 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3801609 | Sensitive | lineage1.1.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3801359 | Sensitive | lineage1.1.1 | None | ERR3799585 | Sensitive | lineage1.1.1 | None | ERR3803780 | Sensitive | lineage1.1.1 | None | ERR3803970 | Sensitive | lineage1.1.1 | None | ERR3803816 | Sensitive | lineage1.1.1 | None | ERR3803988 | Sensitive | lineage1.1.1 | None | ERR3803976 | Sensitive | lineage1.1.1 | None | ERR3806597 | Other | lineage1.1.1 | None | ERR3806609 | Sensitive | lineage1.1.1 | None | ERR3804037 | Sensitive | lineage1.1.1 | None | ERR3804112 | Sensitive | lineage1.1.1 | None | ERR4769452 | HR-TB | None | ERR3806648 | Sensitive | lineage1.1.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4195261 | Sensitive | lineage4.3.4.2 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4195427 | Sensitive | lineage4.3.4.2 | None | ERR4797313 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4811385 | Sensitive | lineage1.1.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4812155 | Sensitive | None | ERR4811493 | HR-TB | None | ERR4811453 | Other | lineage1.1.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | ERR7902716 | Sensitive | lineage1.1.1 | None | ERR7902697 | MDR-TB | lineage1.1.1 | None | ERR7902593 | Sensitive | lineage1.1.1 | None | ERR7902666 | Sensitive | lineage1.1.1 | None | ERR7902729 | HR-TB | lineage1.1.1 | None | ERR9121267 | Sensitive | lineage4.3.4.2 | None | ERR9121248 | Sensitive | lineage4.3.4.2 | None | ERR7902747 | HR-TB | lineage1.1.1 | None | ERR9117823 | Other | lineage1.1.1 | None | ERR9786013 | Sensitive | lineage1.1.1 | None | ERR9786010 | Sensitive | lineage1.1.1 | None | ERR9786014 | Sensitive | lineage1.1.1 | None | ERR9786015 | Sensitive | lineage1.1.1 | None | ERR9786006 | Sensitive | lineage1.1.1 | None | ERR9786020 | Sensitive | lineage1.1.1 | None | ERR9786012 | Sensitive | lineage1.1.1 | None | ERR9786007 | Sensitive | lineage1.1.1 | None | ERR9786018 | Sensitive | lineage1.1.1 | None | ERR9786023 | Other | lineage1.1.1 | None | ERR9786024 | Sensitive | lineage1.1.1 | None | ERR9786019 | Sensitive | lineage1.1.1 | None | ERR9786022 | Sensitive | lineage1.1.1 | None | ERR9786017 | Sensitive | lineage1.1.1 | None | ERR9786030 | Sensitive | lineage1.1.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | ERR9786016 | Sensitive | lineage1.1.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10869070 | Sensitive | lineage4.1.1.2 | None | ERR9786021 | Sensitive | lineage1.1.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR11342380 | Sensitive | lineage1.1.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12882494 | Sensitive | lineage1.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR12882040 | Sensitive | lineage1.1.1 | None | SRR12882493 | Sensitive | lineage1.1.1 | None | SRR12882496 | HR-TB | lineage1.1.1 | None | SRR12882492 | HR-TB | lineage1.1.1 | None | SRR16370298 | Other | lineage1.1.1 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR19115675 | Sensitive | lineage1.1.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
