Run ID: ERR4816756
Sample name:
Date: 01-04-2023 14:36:46
Number of reads: 265954
Percentage reads mapped: 38.5
Strain:
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761196 | p.Leu464Met | missense_variant | 0.67 | rifampicin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.7 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5889 | p.Glu217Gly | missense_variant | 0.5 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7499 | c.198G>A | synonymous_variant | 0.4 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7625 | c.324G>C | synonymous_variant | 0.23 |
gyrA | 7628 | c.327G>C | synonymous_variant | 0.23 |
gyrA | 7631 | c.330G>C | synonymous_variant | 0.23 |
gyrA | 7633 | p.Asp111Ala | missense_variant | 0.23 |
gyrA | 7643 | c.342C>T | synonymous_variant | 0.21 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 760643 | p.Glu279Asp | missense_variant | 0.33 |
rpoB | 761030 | c.1224G>C | synonymous_variant | 0.33 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.29 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.33 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.33 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.5 |
rpoB | 761088 | c.1282_1283delAGinsTC | synonymous_variant | 0.6 |
rpoB | 761096 | c.1290G>C | synonymous_variant | 0.6 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.6 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.6 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 1.0 |
rpoB | 761159 | c.1353G>C | synonymous_variant | 1.0 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.67 |
rpoB | 761174 | c.1368T>C | synonymous_variant | 0.67 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.67 |
rpoB | 761186 | p.Glu460Asp | missense_variant | 0.67 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.67 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.67 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.67 |
rpoB | 761201 | c.1395G>A | synonymous_variant | 1.0 |
rpoB | 761207 | c.1401C>A | synonymous_variant | 1.0 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 1.0 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 1.0 |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.33 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.33 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.25 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.22 |
rpoB | 761657 | c.1851C>T | synonymous_variant | 0.25 |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.22 |
rpoB | 761669 | c.1863C>T | synonymous_variant | 0.22 |
rpoB | 761675 | c.1869G>T | synonymous_variant | 0.22 |
rpoB | 762026 | c.2220G>C | synonymous_variant | 0.38 |
rpoB | 762050 | c.2244G>A | synonymous_variant | 0.29 |
rpoB | 762051 | p.His749Tyr | missense_variant | 0.29 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.5 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.4 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.29 |
rpoB | 762085 | p.Ala760Glu | missense_variant | 0.29 |
rpoB | 762089 | c.2283G>A | synonymous_variant | 0.29 |
rpoB | 762110 | c.2304G>C | synonymous_variant | 0.22 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.43 |
rpoB | 762212 | c.2406G>C | synonymous_variant | 0.3 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.7 |
rpoB | 762225 | p.Glu807Gln | missense_variant | 0.2 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.75 |
rpoB | 762234 | p.Pro810Ser | missense_variant | 0.86 |
rpoB | 762239 | c.2433G>A | synonymous_variant | 0.25 |
rpoB | 762242 | c.2436G>A | synonymous_variant | 0.5 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.88 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.88 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.6 |
rpoB | 762272 | c.2466G>A | synonymous_variant | 0.4 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.25 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.4 |
rpoC | 762959 | c.-411G>T | upstream_gene_variant | 0.17 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.25 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.18 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.2 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.22 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.22 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.29 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.29 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.33 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.33 |
rpoB | 763077 | p.Val1091Thr | missense_variant | 0.33 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.43 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.5 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.5 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.33 |
rpoC | 763483 | c.114G>C | synonymous_variant | 0.33 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.43 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.4 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.57 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.57 |
rpoC | 763537 | c.168C>T | synonymous_variant | 0.33 |
rpoC | 763540 | c.171C>T | synonymous_variant | 0.29 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.5 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.5 |
rpoC | 763558 | c.189C>A | synonymous_variant | 0.25 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.5 |
rpoC | 763578 | p.Phe70Tyr | missense_variant | 0.33 |
rpoC | 763655 | p.Glu96Lys | missense_variant | 0.25 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.33 |
rpoC | 763672 | c.303C>G | synonymous_variant | 0.22 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.29 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.22 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.25 |
rpoC | 763724 | p.Asp119Asn | missense_variant | 0.25 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.22 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.22 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.5 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.5 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.29 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.5 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.67 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.5 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.43 |
rpoC | 764524 | c.1155C>T | synonymous_variant | 0.29 |
rpoC | 764530 | c.1161C>T | synonymous_variant | 0.57 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.71 |
rpoC | 764543 | p.Thr392Ala | missense_variant | 0.57 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.6 |
rpoC | 764551 | c.1182G>C | synonymous_variant | 0.25 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.33 |
rpoC | 764573 | p.Leu402Ile | missense_variant | 0.43 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.43 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.57 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.57 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.43 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.5 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.5 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.33 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.4 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.43 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.33 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.33 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.4 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.33 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.29 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.29 |
rpsL | 781772 | c.213C>T | synonymous_variant | 0.29 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.22 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.25 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.25 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.25 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.22 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1416944 | p.Ser135Thr | missense_variant | 0.33 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472678 | n.833T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472681 | n.838_843delTGGGAT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473109 | n.1264T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473112 | n.1267A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1473384 | n.-274A>G | upstream_gene_variant | 0.67 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474634 | n.977T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474658 | n.1001A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475144 | n.1487G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475171 | n.1514C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475172 | n.1515A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475767 | n.2110_2111insT | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476600 | n.2943A>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476624 | n.2967T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476631 | n.2976A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476631 | n.2973_2974insT | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476664 | n.3007T>A | non_coding_transcript_exon_variant | 0.5 |
rpsA | 1833679 | c.138G>C | synonymous_variant | 0.4 |
rpsA | 1833688 | c.147C>T | synonymous_variant | 0.4 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.4 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.4 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.5 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.33 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.33 |
rpsA | 1834219 | c.678C>G | synonymous_variant | 0.33 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.33 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.33 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.33 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.33 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.5 |
rpsA | 1834246 | c.705G>C | synonymous_variant | 0.33 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.43 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.57 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.5 |
rpsA | 1834285 | c.744G>C | synonymous_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2153951 | p.Val721Met | missense_variant | 0.29 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169134 | c.1479G>T | synonymous_variant | 0.5 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2986783 | c.-56C>A | upstream_gene_variant | 0.29 |
thyX | 3068066 | c.-121T>C | upstream_gene_variant | 1.0 |
thyA | 3074089 | p.Ile128Asn | missense_variant | 0.29 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473998 | c.-9G>A | upstream_gene_variant | 1.0 |
fprA | 3473998 | c.-10_-9insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3641915 | c.381C>G | synonymous_variant | 0.25 |
alr | 3840759 | p.Gln221Arg | missense_variant | 0.29 |
embC | 4240455 | p.Val198Ala | missense_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243453 | p.Ile74Asn | missense_variant | 0.2 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethR | 4327723 | p.Pro59Thr | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |