TB-Profiler result

Run: ERR4816756
Summary

Run ID: ERR4816756

Sample name:

Date: 01-04-2023 14:36:46

Number of reads: 265954

Percentage reads mapped: 38.5

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761196 p.Leu464Met missense_variant 0.67 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.7 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5889 p.Glu217Gly missense_variant 0.5
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7499 c.198G>A synonymous_variant 0.4
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7625 c.324G>C synonymous_variant 0.23
gyrA 7628 c.327G>C synonymous_variant 0.23
gyrA 7631 c.330G>C synonymous_variant 0.23
gyrA 7633 p.Asp111Ala missense_variant 0.23
gyrA 7643 c.342C>T synonymous_variant 0.21
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760643 p.Glu279Asp missense_variant 0.33
rpoB 761030 c.1224G>C synonymous_variant 0.33
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761054 c.1248G>C synonymous_variant 0.33
rpoB 761057 c.1251G>C synonymous_variant 0.33
rpoB 761084 c.1278C>A synonymous_variant 0.5
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.6
rpoB 761096 c.1290G>C synonymous_variant 0.6
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.6
rpoB 761102 c.1296A>G synonymous_variant 0.6
rpoB 761150 c.1344A>C synonymous_variant 1.0
rpoB 761159 c.1353G>C synonymous_variant 1.0
rpoB 761165 c.1359G>C synonymous_variant 0.67
rpoB 761174 c.1368T>C synonymous_variant 0.67
rpoB 761180 c.1374A>C synonymous_variant 0.67
rpoB 761186 p.Glu460Asp missense_variant 0.67
rpoB 761189 c.1383T>C synonymous_variant 0.67
rpoB 761192 c.1386C>G synonymous_variant 0.67
rpoB 761195 c.1389G>C synonymous_variant 0.67
rpoB 761201 c.1395G>A synonymous_variant 1.0
rpoB 761207 c.1401C>A synonymous_variant 1.0
rpoB 761213 c.1407G>C synonymous_variant 1.0
rpoB 761219 c.1413G>C synonymous_variant 1.0
rpoB 761612 c.1806G>T synonymous_variant 0.33
rpoB 761615 c.1809A>C synonymous_variant 0.33
rpoB 761636 c.1830G>T synonymous_variant 0.25
rpoB 761645 c.1839C>G synonymous_variant 0.22
rpoB 761657 c.1851C>T synonymous_variant 0.25
rpoB 761666 c.1860G>C synonymous_variant 0.22
rpoB 761669 c.1863C>T synonymous_variant 0.22
rpoB 761675 c.1869G>T synonymous_variant 0.22
rpoB 762026 c.2220G>C synonymous_variant 0.38
rpoB 762050 c.2244G>A synonymous_variant 0.29
rpoB 762051 p.His749Tyr missense_variant 0.29
rpoB 762057 p.Ile751Val missense_variant 0.5
rpoB 762062 c.2256T>C synonymous_variant 0.4
rpoB 762080 c.2274G>C synonymous_variant 0.29
rpoB 762085 p.Ala760Glu missense_variant 0.29
rpoB 762089 c.2283G>A synonymous_variant 0.29
rpoB 762110 c.2304G>C synonymous_variant 0.22
rpoB 762194 c.2388G>C synonymous_variant 0.43
rpoB 762212 c.2406G>C synonymous_variant 0.3
rpoB 762218 c.2412T>C synonymous_variant 0.7
rpoB 762225 p.Glu807Gln missense_variant 0.2
rpoB 762233 c.2427G>C synonymous_variant 0.75
rpoB 762234 p.Pro810Ser missense_variant 0.86
rpoB 762239 c.2433G>A synonymous_variant 0.25
rpoB 762242 c.2436G>A synonymous_variant 0.5
rpoB 762245 c.2439G>C synonymous_variant 0.88
rpoB 762254 c.2448T>C synonymous_variant 0.88
rpoB 762266 c.2460T>C synonymous_variant 0.6
rpoB 762272 c.2466G>A synonymous_variant 0.4
rpoC 762920 c.-450C>T upstream_gene_variant 0.25
rpoC 762929 c.-441G>C upstream_gene_variant 0.4
rpoC 762959 c.-411G>T upstream_gene_variant 0.17
rpoC 762971 c.-399G>C upstream_gene_variant 0.25
rpoC 762980 c.-390T>C upstream_gene_variant 0.18
rpoC 762983 c.-387C>T upstream_gene_variant 0.2
rpoC 762989 c.-381G>C upstream_gene_variant 0.22
rpoC 762995 c.-375G>C upstream_gene_variant 0.22
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.29
rpoC 763043 c.-327G>C upstream_gene_variant 0.29
rpoC 763053 c.-317T>C upstream_gene_variant 0.33
rpoC 763070 c.-300T>C upstream_gene_variant 0.33
rpoB 763077 p.Val1091Thr missense_variant 0.33
rpoC 763103 c.-267G>C upstream_gene_variant 0.43
rpoC 763115 c.-255T>C upstream_gene_variant 0.5
rpoB 763119 p.Asn1105Asp missense_variant 0.5
rpoC 763127 c.-243G>C upstream_gene_variant 0.33
rpoC 763483 c.114G>C synonymous_variant 0.33
rpoC 763486 c.117T>C synonymous_variant 0.43
rpoC 763528 c.159G>C synonymous_variant 0.4
rpoC 763531 c.162G>C synonymous_variant 0.57
rpoC 763534 c.165T>C synonymous_variant 0.57
rpoC 763537 c.168C>T synonymous_variant 0.33
rpoC 763540 c.171C>T synonymous_variant 0.29
rpoC 763546 c.177A>G synonymous_variant 0.5
rpoC 763550 p.Tyr61Ala missense_variant 0.5
rpoC 763558 c.189C>A synonymous_variant 0.25
rpoC 763570 c.201G>C synonymous_variant 0.5
rpoC 763578 p.Phe70Tyr missense_variant 0.33
rpoC 763655 p.Glu96Lys missense_variant 0.25
rpoC 763660 c.291T>G synonymous_variant 0.33
rpoC 763672 c.303C>G synonymous_variant 0.22
rpoC 763708 c.339G>C synonymous_variant 0.29
rpoC 763717 c.348T>C synonymous_variant 0.22
rpoC 763723 c.354G>C synonymous_variant 0.25
rpoC 763724 p.Asp119Asn missense_variant 0.25
rpoC 763732 c.363C>G synonymous_variant 0.22
rpoC 763735 c.366G>C synonymous_variant 0.22
rpoC 764485 c.1116G>C synonymous_variant 0.5
rpoC 764491 c.1122G>T synonymous_variant 0.5
rpoC 764497 c.1128A>G synonymous_variant 0.29
rpoC 764503 c.1134G>T synonymous_variant 0.5
rpoC 764509 c.1140G>C synonymous_variant 0.67
rpoC 764512 c.1143G>C synonymous_variant 0.5
rpoC 764521 c.1152T>C synonymous_variant 0.43
rpoC 764524 c.1155C>T synonymous_variant 0.29
rpoC 764530 c.1161C>T synonymous_variant 0.57
rpoC 764536 c.1167G>C synonymous_variant 0.71
rpoC 764543 p.Thr392Ala missense_variant 0.57
rpoC 764548 c.1179G>T synonymous_variant 0.6
rpoC 764551 c.1182G>C synonymous_variant 0.25
rpoC 764566 c.1197C>G synonymous_variant 0.33
rpoC 764573 p.Leu402Ile missense_variant 0.43
rpoC 764578 c.1209C>G synonymous_variant 0.43
rpoC 764581 c.1212T>C synonymous_variant 0.57
rpoC 764582 p.Leu405Met missense_variant 0.57
rpoC 764602 c.1233C>T synonymous_variant 0.43
rpoC 764605 c.1236G>T synonymous_variant 0.5
rpoC 764611 c.1242G>T synonymous_variant 0.5
rpoC 764626 c.1257C>T synonymous_variant 0.33
rpoC 764632 c.1263T>C synonymous_variant 0.4
rpoC 764647 c.1278C>T synonymous_variant 0.43
rpoC 764650 c.1281G>T synonymous_variant 0.33
rpoC 764653 c.1284G>C synonymous_variant 0.33
rpoC 764678 p.Lys437Gln missense_variant 0.4
rpoC 764692 c.1323C>T synonymous_variant 0.33
rpoC 766645 p.Glu1092Asp missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 0.29
rpsL 781766 c.207C>T synonymous_variant 0.29
rpsL 781772 c.213C>T synonymous_variant 0.29
rpsL 781802 c.243G>C synonymous_variant 0.22
rpsL 781811 c.252C>T synonymous_variant 0.25
rpsL 781814 c.255C>T synonymous_variant 0.25
rpsL 781817 c.258G>T synonymous_variant 0.25
rpsL 781832 c.273T>C synonymous_variant 0.22
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
embR 1416944 p.Ser135Thr missense_variant 0.33
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.4
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.75
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.8
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.12
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.88
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.86
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.86
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.9
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.9
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.88
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.82
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.78
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.75
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.75
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.83
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.83
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.83
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.9
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.86
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.88
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.6
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.8
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.23
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.96
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.83
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.83
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.31
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.5
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.71
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.25
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.38
rrs 1472678 n.833T>C non_coding_transcript_exon_variant 0.5
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.5
rrs 1472681 n.838_843delTGGGAT non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>G non_coding_transcript_exon_variant 0.5
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.38
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.36
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.53
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.29
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.65
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.68
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.66
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.65
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.32
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.68
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.69
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.92
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.55
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.8
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.81
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.12
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.91
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.12
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.88
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.64
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.72
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.88
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.83
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.87
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.9
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.53
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.58
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.8
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.27
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.4
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.9
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 0.17
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.92
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.92
rrs 1473112 n.1267A>G non_coding_transcript_exon_variant 0.15
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.86
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.93
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.82
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.82
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.12
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.91
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.7
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.7
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.15
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.2
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.23
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.22
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.65
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.79
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.75
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.73
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.73
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.71
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.88
rrl 1473384 n.-274A>G upstream_gene_variant 0.67
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.8
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.8
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.8
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.8
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.8
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.6
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.67
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.6
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.6
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.8
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475144 n.1487G>A non_coding_transcript_exon_variant 0.5
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.67
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.5
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 0.67
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.45
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.67
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.71
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.64
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.25
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.38
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.38
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.25
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.38
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.29
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.57
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.57
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.5
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.5
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.5
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.67
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.5
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.67
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.5
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.5
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.67
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.21
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.8
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.89
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.67
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.6
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.84
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.38
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.67
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.67
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.6
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.75
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.75
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.8
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.6
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.5
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.6
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.4
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.5
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.67
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.83
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.5
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.38
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.38
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.75
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.75
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.38
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.75
rrl 1476624 n.2967T>C non_coding_transcript_exon_variant 0.38
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.6
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.6
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.38
rrl 1476631 n.2976A>G non_coding_transcript_exon_variant 0.6
rrl 1476631 n.2973_2974insT non_coding_transcript_exon_variant 0.6
rrl 1476664 n.3007T>A non_coding_transcript_exon_variant 0.5
rpsA 1833679 c.138G>C synonymous_variant 0.4
rpsA 1833688 c.147C>T synonymous_variant 0.4
rpsA 1833694 c.153G>C synonymous_variant 0.4
rpsA 1833727 c.186G>C synonymous_variant 0.4
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 0.5
rpsA 1834210 c.669C>T synonymous_variant 0.33
rpsA 1834213 c.672G>C synonymous_variant 0.33
rpsA 1834219 c.678C>G synonymous_variant 0.33
rpsA 1834222 c.681T>C synonymous_variant 0.33
rpsA 1834225 c.684C>G synonymous_variant 0.33
rpsA 1834228 c.687C>T synonymous_variant 0.33
rpsA 1834231 c.690T>C synonymous_variant 0.33
rpsA 1834234 c.693G>C synonymous_variant 0.5
rpsA 1834246 c.705G>C synonymous_variant 0.33
rpsA 1834249 c.708T>C synonymous_variant 0.43
rpsA 1834261 c.720A>G synonymous_variant 0.57
rpsA 1834264 c.723G>C synonymous_variant 0.5
rpsA 1834285 c.744G>C synonymous_variant 0.5
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2153951 p.Val721Met missense_variant 0.29
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169134 c.1479G>T synonymous_variant 0.5
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ribD 2986783 c.-56C>A upstream_gene_variant 0.29
thyX 3068066 c.-121T>C upstream_gene_variant 1.0
thyA 3074089 p.Ile128Asn missense_variant 0.29
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473998 c.-9G>A upstream_gene_variant 1.0
fprA 3473998 c.-10_-9insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
fbiB 3641915 c.381C>G synonymous_variant 0.25
alr 3840759 p.Gln221Arg missense_variant 0.29
embC 4240455 p.Val198Ala missense_variant 0.25
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243453 p.Ile74Asn missense_variant 0.2
embA 4243460 c.228C>T synonymous_variant 1.0
embB 4246544 p.Thr11Pro missense_variant 0.17
aftB 4267647 p.Asp397Gly missense_variant 1.0
ethR 4327723 p.Pro59Thr missense_variant 0.33
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0