TB-Profiler result

Run: ERR4819456
Summary

Run ID: ERR4819456

Sample name:

Date: 01-04-2023 16:07:07

Number of reads: 382430

Percentage reads mapped: 29.22

Strain: lineage4.8

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.25 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.77 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.39 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.38 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoB 761084 c.1278C>A synonymous_variant 0.29
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.29
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.33
rpoB 762011 c.2205G>C synonymous_variant 0.15
rpoB 762024 p.Val740Ile missense_variant 0.13
rpoB 762029 c.2223C>G synonymous_variant 0.12
rpoB 762051 p.His749Tyr missense_variant 0.12
rpoB 762057 p.Ile751Val missense_variant 0.12
rpoB 762062 c.2256T>C synonymous_variant 0.12
rpoB 762065 c.2259T>C synonymous_variant 0.12
rpoB 762071 p.Asp755Glu missense_variant 0.12
rpoB 762080 c.2274G>C synonymous_variant 0.2
rpoB 762085 p.Ala760Glu missense_variant 0.21
rpoB 762089 c.2283G>A synonymous_variant 0.21
rpoB 762110 c.2304G>C synonymous_variant 0.17
rpoB 762134 c.2328C>A synonymous_variant 0.18
rpoB 762143 c.2337T>C synonymous_variant 0.18
rpoB 762149 c.2343G>C synonymous_variant 0.17
rpoB 762156 p.Val784Ile missense_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.18
rpoB 762194 c.2388G>C synonymous_variant 0.12
rpoB 762200 c.2394C>T synonymous_variant 0.18
rpoB 762212 c.2406G>C synonymous_variant 0.21
rpoB 762218 c.2412T>C synonymous_variant 0.27
rpoB 762233 c.2427G>C synonymous_variant 0.19
rpoB 762234 p.Pro810Ser missense_variant 0.19
rpoB 762239 c.2433G>A synonymous_variant 0.2
rpoB 762245 c.2439G>C synonymous_variant 0.19
rpoB 762254 c.2448T>C synonymous_variant 0.2
rpoB 762293 c.2487T>C synonymous_variant 0.29
rpoB 762879 p.Met1025Leu missense_variant 0.29
rpoC 762902 c.-468C>T upstream_gene_variant 0.36
rpoC 762911 c.-459C>T upstream_gene_variant 0.46
rpoC 762917 c.-453C>T upstream_gene_variant 0.4
rpoC 762920 c.-450C>T upstream_gene_variant 0.4
rpoC 762929 c.-441G>T upstream_gene_variant 0.38
rpoC 762944 c.-426C>T upstream_gene_variant 0.31
rpoC 762956 c.-414G>T upstream_gene_variant 0.36
rpoC 762962 c.-408C>T upstream_gene_variant 0.33
rpoC 762983 c.-387C>T upstream_gene_variant 0.31
rpoC 762989 c.-381G>C upstream_gene_variant 0.25
rpoB 763038 p.Thr1078Ala missense_variant 0.29
rpoC 763043 c.-327G>C upstream_gene_variant 0.33
rpoC 763053 c.-317T>C upstream_gene_variant 0.36
rpoC 763070 c.-300T>C upstream_gene_variant 0.36
rpoB 763077 p.Val1091Ser missense_variant 0.4
rpoC 763103 c.-267G>C upstream_gene_variant 0.36
rpoC 763115 c.-255T>C upstream_gene_variant 0.33
rpoB 763119 p.Asn1105Asp missense_variant 0.31
rpoC 763127 c.-243G>C upstream_gene_variant 0.33
rpoC 763133 c.-237G>C upstream_gene_variant 0.2
rpoC 763699 c.330G>T synonymous_variant 0.33
rpoC 763708 c.339G>C synonymous_variant 0.33
rpoC 763714 c.345G>C synonymous_variant 0.4
rpoC 763717 c.348T>C synonymous_variant 0.4
rpoC 763718 p.Leu117Val missense_variant 0.33
rpoC 763723 c.354G>C synonymous_variant 0.33
rpoC 763724 p.Asp119Asn missense_variant 0.33
rpoC 763729 c.360G>C synonymous_variant 0.33
rpoC 763732 c.363C>G synonymous_variant 0.33
rpoC 763735 c.366G>C synonymous_variant 0.33
rpoC 763744 c.375G>C synonymous_variant 0.33
rpoC 763751 p.Ile128Val missense_variant 0.33
rpoC 764512 c.1143G>C synonymous_variant 0.22
rpoC 764521 c.1152T>C synonymous_variant 0.27
rpoC 764530 c.1161C>T synonymous_variant 0.36
rpoC 764536 c.1167G>C synonymous_variant 0.36
rpoC 764543 p.Thr392Ala missense_variant 0.33
rpoC 764548 c.1179G>C synonymous_variant 0.33
rpoC 764573 p.Leu402Ile missense_variant 0.23
rpoC 764578 c.1209C>G synonymous_variant 0.23
rpoC 764581 c.1212T>C synonymous_variant 0.21
rpoC 764582 p.Leu405Met missense_variant 0.23
rpoC 764602 c.1233C>T synonymous_variant 0.19
rpoC 764605 c.1236G>T synonymous_variant 0.19
rpoC 764611 c.1242G>T synonymous_variant 0.2
rpoC 764692 c.1323C>T synonymous_variant 0.2
rpoC 764706 p.Leu446Gln missense_variant 0.33
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781796 p.Met79Ile missense_variant 0.17
rpsL 781802 c.243G>C synonymous_variant 0.17
rpsL 781805 c.246G>T synonymous_variant 0.15
rpsL 781811 c.252C>T synonymous_variant 0.15
rpsL 781814 c.255C>T synonymous_variant 0.17
rpsL 781817 c.258G>T synonymous_variant 0.17
rpsL 781832 c.273T>C synonymous_variant 0.17
rpsL 781835 c.276T>C synonymous_variant 0.17
rpsL 781841 c.282C>T synonymous_variant 0.17
rpsL 781845 p.Lys96Arg missense_variant 0.17
rpsL 781851 p.Ile98Val missense_variant 0.18
rpsL 781868 c.309T>C synonymous_variant 0.18
fbiC 1303522 c.594delG frameshift_variant 0.4
fbiC 1303747 p.Thr273Ala missense_variant 1.0
Rv1258c 1406839 p.Val168Ile missense_variant 0.17
embR 1416314 p.Arg345Gln missense_variant 0.29
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.2
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.31
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.57
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.36
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.36
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.36
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.36
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.36
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.97
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.36
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.33
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.65
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.36
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.31
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.35
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.75
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.6
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.75
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.75
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.75
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.75
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 1.0
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.43
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.3
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.47
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.26
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.46
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.46
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.6
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.65
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.69
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.69
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.15
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.12
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.65
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.11
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.75
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.62
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.22
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.99
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.14
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.13
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.72
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.72
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.13
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.13
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.73
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.83
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.86
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.38
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.52
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.35
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.39
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 1.0
rrs 1472681 n.837_838delTT non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.89
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.65
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.77
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.23
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.75
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.76
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.76
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.16
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.12
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.75
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.26
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.74
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.74
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.24
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.5
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.95
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.65
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.32
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.67
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.98
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.95
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.98
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.66
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.63
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.96
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.3
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.27
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.98
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.96
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.98
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.98
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.23
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.24
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.64
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.35
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.39
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.98
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.1
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.97
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.41
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.41
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.15
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.21
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.2
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.21
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.37
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.97
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.97
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.38
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.94
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.93
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.52
rrs 1473291 n.1446G>C non_coding_transcript_exon_variant 0.45
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 0.5
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.48
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.91
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.91
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.48
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.95
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.67
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.25
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.86
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.56
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.33
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.86
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.86
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.88
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.29
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.5
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.75
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.6
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.43
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.45
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.46
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.6
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.6
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.22
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.88
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.29
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.5
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.38
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.38
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.29
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.29
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.29
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.43
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.71
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.38
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.88
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.91
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.97
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.96
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.92
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.68
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.82
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.58
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.25
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.25
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.22
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.29
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.4
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.4
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.5
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.5
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.75
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.75
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.75
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.75
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.75
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.5
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.33
rrl 1476668 n.3011C>T non_coding_transcript_exon_variant 0.33
rpsA 1834216 c.675C>T synonymous_variant 0.4
rpsA 1834234 c.693G>C synonymous_variant 0.29
rpsA 1834240 c.699T>C synonymous_variant 0.2
rpsA 1834249 c.708T>C synonymous_variant 0.22
rpsA 1834261 c.720A>G synonymous_variant 0.2
rpsA 1834264 c.723G>C synonymous_variant 0.2
rpsA 1834294 c.753G>C synonymous_variant 0.23
rpsA 1834298 p.Gln253Glu missense_variant 0.23
rpsA 1834306 c.765T>C synonymous_variant 0.18
rpsA 1834307 p.Asp256Gln missense_variant 0.18
rpsA 1834312 c.771G>A synonymous_variant 0.18
rpsA 1834327 c.786G>T synonymous_variant 0.2
rpsA 1834345 c.804C>T synonymous_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.29
rpsA 1834354 c.813G>C synonymous_variant 0.29
rpsA 1834405 c.864C>T synonymous_variant 0.33
rpsA 1834411 c.870T>C synonymous_variant 0.22
rpsA 1834417 c.876G>C synonymous_variant 0.22
rpsA 1834423 c.882G>C synonymous_variant 0.2
rpsA 1834427 p.Ile296Val missense_variant 0.2
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169460 p.Gly385Ser missense_variant 0.25
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518842 p.Gly243Val missense_variant 0.11
clpC1 4038761 c.1944C>A synonymous_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243741 c.510_511delTG frameshift_variant 0.14
embB 4246151 c.-363A>G upstream_gene_variant 1.0
ethA 4326863 p.Met204Thr missense_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0