lineage | Count |
---|---|
lineage4.9 | 32 |
23 | |
lineage4 | 17 |
lineage2.2.1.2 | 1 |
lineage4.6.5 | 2 |
lineage6 | 1 |
lineage4.1.1.3 | 2 |
lineage3 | 7 |
lineage4.7 | 1 |
lineage4.3.3 | 1 |
lineage4.8;lineage4.3.3 | 3 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.1.2.1 | 3 |
lineage4.6.1.2 | 3 |
La1.6 | 1 |
lineage4.3.4.2.1 | 1 |
La1.8.1 | 3 |
lineage3.1.1 | 1 |
lineage4.2.1 | 1 |
lineage2.2.1 | 5 |
lineage4.4.1.1 | 3 |
lineage2.2 | 3 |
lineage3.1.3 | 1 |
lineage4;lineage2 | 1 |
lineage4.8 | 1 |
lineage1.1.1 | 1 |
lineage4.9;lineage4.2.1 | 1 |
lineage4.5 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage6.2.3;lineage1.1.2 | 1 |
lineage4;lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 125 |
ID | Drug resistance | Lineage | Country iso2 | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR6866639 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR6866807 | HR-TB | lineage4 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9787030 | Sensitive | lineage6 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1049672 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1140736 | RR-TB | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR1750907 | RR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR4815079 | RR-TB | lineage3 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR4816964 | Other | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819462 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | None | ERR4828628 | MDR-TB | lineage4.5 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3283014 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR4024991 | Other | None |
---|