EBG00000313339 - n.2368G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
2 Sensitive
21 RR-TB
43 HR-TB
37 MDR-TB
8 Pre-XDR-TB
1 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.1;lineage4.9 | 10 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.1.2.1 | 7 |
| lineage4.3.4.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 15 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage2.2.1 | 15 |
| lineage4.9 | 16 |
| lineage4.8 | 17 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| 3 | |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.1 | 1 |
| lineage2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage1.2.1.2.1 | 1 |
| La1.4 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage3.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.8.1 | 5 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.4.1.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.1.3 | 3 |
| La1.7.1 | 4 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage4.6.4 | 2 |
| lineage1.1 | 1 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 160 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR867543 | Sensitive | lineage4.6.2.2 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR3675507 | Other | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR8665994 | Other | lineage4.9 | None | ERR978756 | Other | lineage4.8 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786526 | Other | lineage4.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR5311077 | Other | La1.8.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR978747 | Other | lineage4.8 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR867545 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR9786843 | Other | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675482 | Other | lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3468613 | Other | La1.8.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786525 | Other | lineage4 | None | SRR13861332 | Other | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | SRR1791696 | Other | La1.8.1 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1640750 | Other | None | ERR867544 | Other | lineage4.9 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1169249 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR21469202 | Other | La1.7.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | ERR3468488 | Other | La1.8.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None |
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