EBG00000313339 - n.2971T>G
Drug resistance types
12 Sensitive
45 RR-TB
12 HR-TB
29 MDR-TB
20 Pre-XDR-TB
1 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 30 |
| lineage2.2.2 | 3 |
| lineage2.2 | 3 |
| lineage2.2.1.1 | 2 |
| lineage4.8 | 10 |
| lineage4 | 14 |
| La1.7.1 | 1 |
| lineage1.1.2 | 7 |
| lineage1.2.2 | 1 |
| 8 | |
| lineage4.9 | 34 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.3.3 | 9 |
| lineage4.1.1 | 3 |
| lineage1.1.3.1 | 3 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 18 |
| lineage3.1.3 | 1 |
| lineage3 | 17 |
| lineage4.2.1 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1 | 1 |
| lineage1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.6 | 2 |
| lineage6 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.3.2.1;lineage3.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.8.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.2.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.9;lineage4.8 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.1.1.3 | 5 |
| lineage4.3.2.1 | 2 |
| lineage4.1.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.4 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| La1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 225 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR4815118 | Other | lineage2.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR21469201 | Other | La1.7.1 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4814312 | Other | lineage4 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4814362 | Other | lineage4.8 | None | ERR4815310 | Other | None | ERR4815777 | Other | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR4814709 | Other | lineage4.1.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814623 | Other | lineage4.8 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4815502 | Other | lineage4.1 | None | ERR4815792 | Other | lineage4.1.2.1 | None | ERR4815550 | Other | lineage4 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR4815898 | Other | lineage3 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR4815956 | Other | lineage1.1.2 | None | ERR4817060 | RR-TB | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4816464 | Other | lineage3 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | ERR2229314 | Sensitive | lineage4.8 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR4816758 | Other | lineage4.8 | gb | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816756 | RR-TB | None | ERR4816866 | Other | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR4818988 | Other | lineage1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817877 | Sensitive | lineage4.6 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4817948 | Other | lineage3 | gb | ERR4818752 | Other | lineage3 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818180 | Other | lineage4.8 | gb | ERR4819073 | Other | lineage4.1.2.1 | None | ERR245795 | Sensitive | lineage4.3.2.1;lineage3.1.1 | None | ERR4818245 | Sensitive | lineage3.1.1 | gb | ERR4818930 | Other | lineage4.1.2.1 | None | ERR4818384 | Other | lineage4.8 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4818548 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4817619 | Other | lineage4.1.2.1 | gb | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4819192 | Other | lineage3 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4820324 | Other | lineage4 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819555 | Other | lineage4.8 | None | ERR4820408 | Other | lineage4.1.2.1 | None | ERR2514389 | Other | lineage3 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820864 | Other | lineage4.9;lineage4.8 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR2515032 | Other | lineage3 | None | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4820107 | RR-TB | None | ERR4821775 | Other | lineage4 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR4821796 | Other | lineage4.1.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821222 | Other | lineage4.3.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4821372 | Other | lineage4.1.2.1 | None | SRR6044769 | Other | lineage1.1.2 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR5818388 | Other | lineage4.9 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045909 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045384 | Other | lineage4.1.2 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6982246 | Sensitive | lineage4 | None | ERR502507 | Sensitive | lineage5.1.4 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR323068 | Sensitive | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796571 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796629 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR6197034 | Other | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9117704 | Other | lineage4.6 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR12882699 | Sensitive | lineage1.1.2 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR16156775 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None |
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