EBG00000313339 - n.1891C>T
Drug resistance types
8 Sensitive
48 RR-TB
15 HR-TB
45 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
112 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 17 |
| lineage4.9 | 40 |
| lineage4 | 10 |
| lineage3 | 21 |
| lineage3.1.2.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage3.1.1 | 4 |
| lineage4.8 | 16 |
| lineage1.1.2 | 3 |
| lineage4.4.1.1 | 5 |
| lineage4.6.5 | 2 |
| lineage5.1.1 | 3 |
| lineage4.3.3 | 9 |
| lineage2.2.1 | 26 |
| La1.8.1 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.3.2.1 | 2 |
| lineage4.1.1.3 | 6 |
| lineage4.6.1.1 | 1 |
| lineage4.7 | 2 |
| lineage4.2.1 | 5 |
| lineage4.3.4.2.1 | 8 |
| lineage4.9.1 | 2 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.6 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| 5 | |
| La2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.6.2.2 | 7 |
| lineage2.2 | 2 |
| lineage1.1.3.1 | 3 |
| lineage4.1.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage5 | 2 |
| lineage4.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage3.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046020 | Other | lineage3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6046275 | Other | lineage3.1.1 | None | ERR4829337 | Other | lineage4.8 | None | SRR6046442 | Other | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046815 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502477 | Sensitive | lineage5.1.1 | gh | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR036207 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796597 | Other | lineage4 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796629 | Other | lineage4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140736 | RR-TB | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1163007 | Sensitive | lineage2.2.1 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1173740 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR20969680 | Sensitive | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | ERR4815301 | Other | lineage4.4.2 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048374 | Sensitive | lineage4.8 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR4815777 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR1750899 | Sensitive | lineage4.1.1.3 | zw | ERR4814617 | Other | lineage1.1.3.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814709 | Other | lineage4.1.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR1750904 | Sensitive | lineage4.9.1 | za | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815467 | Other | lineage3 | None | ERR1750922 | Sensitive | lineage4.1.1.3 | za | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR3675265 | Other | lineage4 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4817194 | Other | lineage4.1.2.1 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4816967 | RR-TB | lineage5 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816232 | Other | lineage4 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4816464 | Other | lineage3 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4818655 | Other | lineage4.3.3 | None | ERR4818691 | Other | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817874 | Other | lineage3 | None | ERR4818752 | Other | lineage3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818465 | Other | lineage3 | gb | ERR234215 | MDR-TB | lineage2.2.1 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4819191 | Other | lineage4.6.2.2 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819166 | Other | lineage3 | gb | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR4819198 | Other | lineage2.2.1 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | ERR4820188 | Other | lineage3 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR4821028 | Sensitive | lineage3.1.1 | None | ERR4821812 | Other | lineage4.8 | gb | SRR6045464 | Other | lineage4.1.1.3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045485 | Other | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821310 | Other | lineage5 | None | ERR4821360 | Other | lineage4.1.2.1 | None | ERR4822167 | Other | lineage4.6.2.2 | None | ERR4821563 | HR-TB | lineage1.1.2 | gb | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR4821761 | Other | lineage3 | gb | SRR6045664 | Other | lineage4.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821719 | Other | lineage3 | gb | SRR6044784 | MDR-TB | lineage3 | None | SRR6044817 | Other | lineage3 | None |
|---|
