lineage | Count |
---|---|
La1.7.1 | 22 |
lineage2.2 | 2 |
3 | |
lineage4 | 3 |
lineage2.2.1 | 15 |
lineage4.1.2.1 | 2 |
lineage4.9 | 12 |
lineage3 | 2 |
lineage1.1.1 | 1 |
lineage5.1.1 | 2 |
La1.8.1 | 3 |
lineage4.1.1.3 | 2 |
lineage4.2.1 | 2 |
lineage4.7 | 2 |
lineage4.8 | 1 |
lineage4.4.1.2 | 1 |
La1.7.X-unk4 | 1 |
lineage6.2.3;lineage1.1.2 | 1 |
lineage2.2.2 | 1 |
lineage1.1.2 | 1 |
lineage4.6.5 | 1 |
lineage4.8;lineage4.3.3 | 3 |
lineage4.3.3 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4 | 1 |
spoligotype | Count |
---|---|
None | 86 |
ID | Drug resistance | Lineage | Country iso2 | SRR23961417 | Other | La1.7.1 | None | SRR23961513 | Other | La1.7.1 | None | SRR23961454 | Other | La1.7.1 | None | SRR23961397 | Other | La1.7.1 | None | SRR23961516 | Other | La1.7.1 | None | SRR23961399 | Other | La1.7.1 | None | SRR23961497 | Other | La1.7.1 | None | SRR23961539 | Other | La1.7.1 | None | SRR23961404 | Other | La1.7.1 | None | SRR23961440 | Other | La1.7.1 | None | SRR23961432 | Other | La1.7.1 | None | SRR23961449 | Other | La1.7.1 | None | SRR23961425 | Other | La1.7.1 | None | SRR23961502 | Other | La1.7.1 | None | SRR23961479 | Other | La1.7.1 | None | SRR23961480 | Other | La1.7.1 | None | SRR23961455 | Other | La1.7.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR23961522 | Other | La1.7.1 | None | ERR4815310 | Other | None | ERR4815550 | Other | lineage4 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5087846 | Other | La1.8.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR036207 | Other | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5863893 | MDR-TB | lineage2.2.1 | None | ERR5864958 | MDR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1173740 | Other | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR11972447 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13199723 | Other | La1.7.1 | None | SRR13199727 | Other | La1.7.1 | None | SRR13199731 | Other | La1.7.1 | None | SRR13199760 | Other | La1.7.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None |
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