EBG00000313339 - n.697C>T
Drug resistance types
19 Sensitive
56 RR-TB
29 HR-TB
65 MDR-TB
30 Pre-XDR-TB
0 XDR-TB
150 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7.1 | 3 |
| lineage2.2.1 | 66 |
| lineage4.9 | 65 |
| lineage4.1.2.1 | 12 |
| lineage2.2.1.1 | 3 |
| lineage4.8 | 15 |
| lineage2.2 | 3 |
| lineage4 | 20 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.4.1.1 | 6 |
| lineage3 | 18 |
| lineage4.1.1.3 | 6 |
| lineage3.1.3 | 3 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.1.3 | 1 |
| lineage4.5 | 3 |
| 13 | |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.2 | 3 |
| lineage4;lineage2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage1.1.2 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.6.2.2 | 3 |
| lineage3.1.1 | 4 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage4.3.1.1 | 4 |
| lineage4.2.1 | 2 |
| lineage4.2.2.2 | 3 |
| lineage4.4 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage3.1.2.2 | 2 |
| lineage4.8;lineage3 | 1 |
| lineage4.7 | 3 |
| lineage1.2.2.2 | 2 |
| lineage4.6.5 | 1 |
| lineage4.3.3 | 5 |
| lineage4.2.1.1 | 1 |
| lineage4.1 | 1 |
| lineage5.1.1 | 2 |
| La1.8.1 | 11 |
| lineage4.1.1 | 2 |
| lineage4.3.2.1 | 3 |
| lineage4.4.2 | 5 |
| lineage4.9.1 | 1 |
| lineage2.2.2 | 6 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage6.2.3;lineage1.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| La1.3 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage4.2.2 | 1 |
| lineage6 | 1 |
| La1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 349 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21469200 | Other | La1.7.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814362 | Other | lineage4.8 | None | SRR22424890 | MDR-TB | lineage4.8 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR1750920 | Sensitive | lineage4.4.1.1 | za | SRR3675513 | Other | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675509 | Other | lineage4.9 | None | ERR1750929 | Sensitive | lineage4.1.1.3 | za | ERR2027220 | Other | lineage3.1.3 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR3675565 | Other | lineage3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4817069 | RR-TB | None | ERR4816470 | Other | lineage3 | None | ERR2229760 | Other | lineage4.8 | dk | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818431 | Other | lineage1.1.2 | gb | SRR5007165 | MDR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819462 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820484 | Other | lineage4.8 | None | ERR1023509 | Other | None | ERR4819933 | Other | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4820586 | Other | lineage3 | gb | ERR4820030 | Other | lineage4.9 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820833 | HR-TB | None | SRR6046087 | Other | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045778 | Other | lineage3.1 | None | SRR6044817 | Other | lineage3 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6045909 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045997 | Other | lineage3.1.3 | gb | SRR6044983 | Other | lineage3.1.1 | None | SRR6046044 | Sensitive | lineage4.3.1.1 | gb | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045379 | Other | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046729 | Other | None | SRR6046482 | HR-TB | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046839 | Other | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6896545 | Other | lineage4.9 | None | ERR5087486 | Other | La1.8.1 | None | ERR5087444 | Other | La1.8.1 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR5087596 | Other | La1.8.1 | None | SRR7131123 | Other | lineage4.8 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131231 | Other | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7496471 | Sensitive | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR036207 | Other | lineage4.9 | None | ERR067712 | HR-TB | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283032 | HR-TB | None | ERR3439429 | Other | La1.8.1 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4769436 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4797157 | MDR-TB | lineage4.2.2.2 | in | ERR4800297 | Other | lineage4.1.1.3 | in | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6197036 | Other | lineage4 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR767970 | Sensitive | lineage2.2.1 | th | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049672 | Other | lineage3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16156832 | RR-TB | None | SRR16156751 | RR-TB | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002902 | Other | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002900 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304094 | Other | lineage6 | None | SRR19304096 | Other | La1.2 | None |
|---|
