Rv0668 - c.201G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
65 Sensitive
9 RR-TB
15 HR-TB
8 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.9 | 79 |
| lineage2.2.1;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.1.1.3.1 | 1 |
| 1 | |
| lineage4.9;lineage7 | 3 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| La1;lineage4.9 | 2 |
| lineage3;lineage4 | 1 |
| lineage2.2.1 | 6 |
| La3;lineage4.9 | 5 |
| lineage3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.4.1 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.9.1 | 3 |
| lineage4.3.4.2.1 | 1 |
| La1.8.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| La1.4 | 1 |
| lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 138 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR176751 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR1792011 | Other | La1.8.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | SRR3675582 | Other | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR926163 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None |
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