EBG00000313339 - n.542G>A
Drug resistance types
21 Sensitive
14 RR-TB
9 HR-TB
13 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 25 |
| lineage4.3.4.2 | 2 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.1.2 | 4 |
| lineage4 | 8 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2.1 | 10 |
| lineage4.3.4 | 1 |
| lineage4.3.3 | 4 |
| lineage3 | 8 |
| lineage4.1.1.2 | 1 |
| lineage5.1.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 6 |
| lineage4.6 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.6.1.2 | 3 |
| lineage4.3.1.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.2.2.2 | 2 |
| La1.4 | 1 |
| lineage2.2.1 | 31 |
| lineage4.2.2 | 2 |
| lineage2.2 | 1 |
| lineage2.2.2 | 3 |
| lineage4.4.2 | 1 |
| lineage4.8 | 12 |
| 4 | |
| lineage2.2.1.1 | 3 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.3 | 2 |
| lineage3.1 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4.1.3 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage3.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10796571 | Other | lineage4.9 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796629 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796634 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR6197034 | Other | lineage4.9 | None | ERR10796635 | Other | lineage4 | None | ERR4457901 | Sensitive | lineage4 | None | ERR4797593 | Sensitive | lineage3 | in | ERR5908131 | Sensitive | lineage4.1.1.2 | None | ERR6197022 | Other | lineage4.9 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR751338 | Other | lineage5.1.1 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117732 | Other | lineage1.2.2.2 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117823 | Other | lineage1.1.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR11972438 | HR-TB | lineage1.1.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | ERR176771 | Sensitive | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR22048352 | Sensitive | lineage4.2.2.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR3675265 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR176718 | Sensitive | lineage2.2.1 | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027220 | Other | lineage3.1.3 | None | SRR3675513 | Other | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027277 | Other | lineage4.8 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR245662 | Sensitive | lineage1.2.2.1 | None | ERR4818296 | Other | lineage4.2.2 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4819770 | Other | lineage4.8 | gb | ERR4820713 | HR-TB | lineage4.8 | None | SRR6046087 | Other | None | ERR4822280 | Other | lineage4.1.3 | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044993 | Other | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045102 | Sensitive | lineage4.6.2.2 | gb | SRR6045952 | HR-TB | None | SRR6045986 | Other | lineage3 | None | SRR6045365 | Other | lineage3 | gb | SRR6046177 | Other | lineage3.1.2 | None | SRR6045178 | Other | lineage3 | None | SRR6045358 | Sensitive | lineage4.9 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046482 | HR-TB | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046761 | Other | lineage3 | gb | SRR6046848 | Other | lineage4.6.5 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | SRR7131075 | Other | lineage4.8 | None | ERR502497 | Sensitive | lineage4.9 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None |
|---|
