EBG00000313339 - n.2029C>G
Drug resistance types
20 Sensitive
34 RR-TB
12 HR-TB
21 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
147 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 33 |
| lineage4.3.3 | 10 |
| lineage3 | 28 |
| lineage4.9 | 28 |
| lineage2.2.2 | 2 |
| lineage4.2.2 | 2 |
| lineage4.8 | 16 |
| lineage4.1.1.3 | 4 |
| lineage4.4.1.2 | 1 |
| lineage6 | 2 |
| lineage4.1.2.1 | 14 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.6 | 4 |
| lineage4.1 | 1 |
| lineage1.2.1.1 | 2 |
| lineage5 | 1 |
| lineage4.6.2.2 | 5 |
| lineage4.4.1.1 | 8 |
| lineage4.3.4.2 | 1 |
| lineage3.1 | 2 |
| lineage4 | 13 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 1 |
| lineage4.1.2 | 4 |
| lineage4;lineage3 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1.1.3.1 | 3 |
| lineage4.8.2 | 2 |
| lineage4.8.1 | 3 |
| lineage1.1.2 | 7 |
| lineage4.3.1.1 | 5 |
| lineage6.1.3 | 1 |
| lineage3.1.1 | 4 |
| lineage4.2.2.2 | 5 |
| lineage4.2.1 | 1 |
| lineage4.1.1 | 4 |
| lineage4.7 | 1 |
| lineage1.1.1.1 | 1 |
| 2 | |
| lineage4.6.5 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.3.4.1 | 4 |
| lineage4.3 | 2 |
| lineage4.3.4 | 2 |
| lineage1.2.2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 245 |
Geographic prevalence
Country level data for this variant is available for 22 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR15276982 | Pre-XDR-TB | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR19303805 | Other | lineage4.8 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR19304094 | Other | lineage6 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR3675227 | Other | lineage4.9 | None | SRR3675475 | Other | lineage4.1.1.3 | None | ERR4815268 | Other | lineage4.8 | None | SRR3675230 | RR-TB | lineage3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR3675291 | Sensitive | lineage4.6 | gb | ERR4815502 | Other | lineage4.1 | None | ERR4814911 | Other | lineage4.3.3 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4816967 | RR-TB | lineage5 | None | SRR3675454 | Other | lineage3 | gb | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | ERR4815919 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816231 | Other | lineage4 | None | ERR2027304 | Sensitive | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816232 | Other | lineage4 | None | SRR3675565 | Other | lineage3 | None | ERR4818691 | Other | lineage4.8 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4817874 | Other | lineage3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818797 | Other | lineage4.5 | None | SRR4035822 | Sensitive | lineage4.1.2 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818212 | Sensitive | lineage4.6 | gb | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818407 | Other | lineage4.3.2 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2513296 | Other | lineage4.1.2.1 | gb | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007186 | Other | lineage4.6 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4819324 | Other | lineage4.8 | gb | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819131 | Other | lineage4 | None | ERR4819166 | Other | lineage3 | gb | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR2514668 | Other | lineage4.8.1 | gb | ERR4819546 | HR-TB | lineage3 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR4820151 | RR-TB | lineage4.8 | None | SRR6045485 | Other | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821054 | Other | lineage3 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR5818572 | Sensitive | lineage4.2.2.2 | None | ERR4821563 | HR-TB | lineage1.1.2 | gb | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | ERR4822114 | Other | lineage4.1.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045778 | Other | lineage3.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6045743 | Other | lineage3 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045859 | Other | lineage3 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6044904 | Other | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6044991 | Sensitive | lineage4.8 | gb | SRR6045178 | Other | lineage3 | None | SRR6046020 | Other | lineage3 | None | SRR6045986 | Other | lineage3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046208 | Other | lineage4 | None | SRR6046291 | Other | lineage3 | None | SRR6046246 | Other | lineage3 | None | SRR6045335 | Other | lineage4.1.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR4829337 | Other | lineage4.8 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046457 | Other | lineage3 | gb | SRR6046534 | Other | lineage1.1.2 | None | SRR6046447 | Sensitive | lineage4.8 | gb | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046729 | Other | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046679 | Other | lineage3 | gb | SRR6046739 | Other | lineage1.1.2 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046905 | Other | lineage3 | gb | SRR6398013 | Other | lineage4.1.2 | ca | SRR7131121 | Other | lineage4.3.3 | None | SRR6046815 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971223 | Other | lineage2.2.1 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796573 | Other | lineage4.8 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796592 | Other | lineage4 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796627 | Other | lineage4 | None | ERR10796630 | HR-TB | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796634 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR6197030 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6 | None | ERR9117675 | Other | lineage4.8 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117781 | Other | lineage3.1.3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117818 | Sensitive | lineage1.1.2 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9117841 | Other | lineage4.8.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349178 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342690 | Sensitive | lineage4.1.2.1 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None |
|---|
