Rv3596c - c.690G>C
Drug resistance types
64 Sensitive
35 RR-TB
61 HR-TB
28 MDR-TB
20 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 41 |
| lineage4 | 45 |
| lineage4.8 | 7 |
| lineage4.4.1.1 | 3 |
| La1.7.1 | 1 |
| lineage4.1 | 3 |
| lineage4.9 | 77 |
| 48 | |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.4.2 | 2 |
| lineage1.2.1.1 | 2 |
| lineage2.1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage5 | 2 |
| lineage3 | 5 |
| lineage3.1 | 1 |
| lineage4.6.1.2 | 4 |
| lineage4.3.3 | 3 |
| lineage3.1.2.1 | 1 |
| lineage3.1.3 | 1 |
| lineage1 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 6 |
| lineage4.1.1.3.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.4.1.2 | 1 |
| La1 | 1 |
| La1.8.1 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 282 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR21675425 | HR-TB | lineage4.8 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692899 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR3675455 | Sensitive | lineage4 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4814312 | Other | lineage4 | None | SRR3675477 | Other | lineage4.9 | None | ERR4815301 | Other | lineage4.4.2 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | ERR158583 | HR-TB | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR4815777 | Other | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675318 | Other | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675456 | HR-TB | None | SRR3675502 | Other | None | SRR3675522 | Other | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675555 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4819051 | Other | lineage4 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2515304 | Pre-XDR-TB | lineage2.2.1 | za | ERR4819131 | Other | lineage4 | None | ERR4820324 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819575 | Sensitive | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341418 | Other | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR1023509 | Other | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820833 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2517475 | Other | lineage4 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821310 | Other | lineage5 | None | ERR4821550 | Other | lineage2.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046362 | HR-TB | None | SRR6046250 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046460 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6046482 | HR-TB | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR4831638 | Sensitive | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR4831719 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR502889 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR502943 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR10796569 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283047 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR4187671 | Other | lineage4.9;La1.8.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4797474 | Other | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4798406 | HR-TB | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR736837 | Other | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866410 | Sensitive | None | ERR6358951 | HR-TB | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9634265 | Sensitive | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1173310 | MDR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR13837442 | Sensitive | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None |
|---|
