Rv3596c - c.690G>C
Drug resistance types
77 Sensitive
29 RR-TB
33 HR-TB
28 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.9 | 99 |
| lineage2.2.1 | 29 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.3.3 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage3 | 3 |
| lineage2.2;lineage4 | 2 |
| lineage4.1.1.3 | 4 |
| La3;lineage4.9 | 8 |
| lineage4.4 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.8 | 7 |
| lineage1.2.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.6.1.2 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.2.1 | 4 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 2 |
| lineage5.1.4 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| 1 | |
| lineage4.2.1.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage4.3.2.1 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage5 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.7 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 232 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1173719 | Other | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2513259 | Other | lineage3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR6046492 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR400345 | Other | lineage4.9 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR387051 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4817204 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6044835 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675502 | Sensitive | lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR7645928 | Other | lineage4.7 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR473323 | HR-TB | lineage4.9 | None |
|---|
