lineage | Count |
---|---|
lineage3 | 7 |
lineage4.9 | 41 |
lineage4.8 | 1 |
lineage4 | 11 |
8 | |
lineage4.5 | 1 |
lineage3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 1 |
lineage4.3.3 | 4 |
lineage4.1.1.3.1 | 3 |
lineage4.9;lineage3 | 1 |
lineage4.4.1.1 | 3 |
lineage4.8.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4.3 | 1 |
lineage2.2.1 | 27 |
lineage1.1.3.1 | 2 |
lineage4.2.2 | 1 |
lineage3.1.1 | 2 |
lineage4.9;lineage4.2.1 | 1 |
lineage4.2.2.2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage5.1.1 | 1 |
lineage4.2.1 | 2 |
La1.7.X-unk4 | 1 |
La1.2 | 1 |
lineage4.9;La1.3 | 2 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.6.5 | 2 |
lineage4.4 | 1 |
La1.4 | 1 |
lineage4.4.2 | 1 |
lineage2.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 137 |
ID | Drug resistance | Lineage | Country iso2 | ERR4815556 | RR-TB | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675280 | HR-TB | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4815868 | RR-TB | lineage4 | None | SRR3675456 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816231 | Other | lineage4 | None | SRR3675555 | HR-TB | None | ERR4817069 | RR-TB | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4816417 | Other | lineage4.9 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817433 | Sensitive | lineage4.9;lineage3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2515055 | Other | lineage3 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820107 | RR-TB | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | ERR2693227 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6789628 | HR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR10796629 | Other | lineage4 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR387051 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4769419 | Other | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769418 | Other | La1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1173310 | MDR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None |
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