lineage | Count |
---|---|
lineage4 | 8 |
lineage4.3.4.2.1 | 6 |
lineage2.2.1 | 21 |
lineage4.8 | 5 |
lineage3 | 9 |
lineage3.1.2.1 | 1 |
14 | |
lineage4.9 | 65 |
lineage4.6.2.2 | 1 |
lineage4.3.4.2 | 1 |
lineage4.3 | 1 |
lineage1.1.1 | 1 |
lineage3.1 | 1 |
lineage5.2 | 1 |
lineage4.1.2.1 | 6 |
lineage4.2.1 | 5 |
lineage4.1.1.3 | 4 |
lineage4.3.3 | 2 |
lineage2.2.1.1 | 1 |
lineage4.7 | 1 |
lineage4.8.1 | 1 |
lineage4.3.2.1 | 2 |
lineage2.2.2 | 3 |
lineage4.9.1 | 1 |
La1.7.X-unk4 | 1 |
lineage3.1.1 | 2 |
La1.3 | 1 |
lineage4.5;lineage2.2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La1.6 | 1 |
La1.8.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
La2 | 1 |
La1.4 | 1 |
lineage4.4 | 1 |
La1.7.1 | 2 |
lineage4.4.2 | 1 |
spoligotype | Count |
---|---|
None | 186 |
ID | Drug resistance | Lineage | Country iso2 | ERR4814639 | HR-TB | lineage4 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4812771 | RR-TB | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR176751 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR212001 | HR-TB | None | ERR4816417 | Other | lineage4.9 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | SRR3675571 | HR-TB | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4819017 | RR-TB | lineage3 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4819314 | Other | lineage1.1.1 | None | SRR5341222 | Sensitive | lineage3.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR4822138 | Other | lineage4.1.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4822224 | HR-TB | lineage4.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046250 | Other | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR11465665 | Other | lineage4.1.1.3 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323068 | Sensitive | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR3283021 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4811493 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6052110 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358991 | HR-TB | None | ERR6052085 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173170 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175064 | MDR-TB | lineage4.3.3 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR16278274 | Other | La1.4 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None |
---|