Rv0668 - c.297G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
41 Sensitive
22 RR-TB
26 HR-TB
22 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 69 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 5 |
| La2 | 1 |
| La1.4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1 | 18 |
| lineage3.1.1 | 2 |
| La1.7.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| lineage4.7 | 1 |
| 4 | |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 7 |
| lineage1.1.1.1 | 1 |
| lineage4 | 1 |
| La1.6 | 1 |
| lineage4.4 | 1 |
| lineage4.8 | 5 |
| lineage4.6.2.2 | 1 |
| lineage3 | 7 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.8.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 165 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4820030 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR13888750 | Other | La2 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR4816417 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR21469201 | Other | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR867575 | Other | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR4769508 | RR-TB | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR176751 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR212001 | HR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6044952 | Other | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None |
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