Rv3596c - c.717C>G
Drug resistance types
50 Sensitive
14 RR-TB
63 HR-TB
29 MDR-TB
8 Pre-XDR-TB
1 XDR-TB
171 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 27 |
| lineage2.1;lineage4.9 | 16 |
| lineage2.2;lineage4 | 1 |
| lineage4.9 | 108 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage1.1.1 | 3 |
| 34 | |
| lineage4.1.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.2.1 | 13 |
| lineage4.6.1.2 | 4 |
| lineage4.9;lineage9 | 1 |
| lineage4.7 | 3 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.9;lineage6.3 | 7 |
| La3;lineage4.9 | 3 |
| lineage3 | 3 |
| lineage4.4.1.1 | 3 |
| lineage2.1 | 4 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.8 | 11 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.3.3 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2.2 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.1.1 | 4 |
| lineage3.1.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| lineage4 | 3 |
| lineage4.4 | 1 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.2.1 | 2 |
| La3;lineage2.2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.1.3.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.3.2.1 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.6.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 336 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4811075 | Other | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR28119753 | Other | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR3675221 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR2514692 | Other | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR6044855 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | ERR4815604 | Other | None | ERR4798823 | HR-TB | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR7496517 | Other | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR15368973 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR1023302 | MDR-TB | lineage3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR11049020 | Other | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR29051077 | Other | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4811105 | HR-TB | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4811311 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | SRR7535086 | Other | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR25827682 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR1173153 | Other | lineage4.9 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR176651 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1196494 | MDR-TB | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR26159043 | Other | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811142 | RR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR11081258 | Other | lineage4.8 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR28119777 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR4817060 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1173633 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR3675275 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1175074 | Other | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None |
|---|
