Rv3596c - c.717C>G
Drug resistance types
39 Sensitive
20 RR-TB
100 HR-TB
30 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
108 Other
lineage Counts
| lineage | Count |
|---|---|
| 95 | |
| lineage4.9 | 63 |
| lineage4 | 21 |
| lineage4.4.1.1 | 6 |
| lineage2.2.1 | 22 |
| lineage4.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.2.1 | 15 |
| lineage4.7 | 3 |
| lineage4.8 | 12 |
| lineage4.2.1 | 3 |
| lineage4.3.4.2.1 | 2 |
| lineage4.4.1.2 | 2 |
| lineage3;La3 | 1 |
| La1.8.1 | 3 |
| lineage4.6.2.2 | 3 |
| lineage4.1.3 | 2 |
| lineage4.9;La1.8.1 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage2 | 4 |
| lineage3 | 6 |
| La1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.1 | 2 |
| lineage1.1.2 | 2 |
| lineage4.3.2 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage4.6.1.2 | 5 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 3 |
| lineage4.4.1.1.1 | 1 |
| lineage3.1 | 2 |
| lineage1.1.1 | 3 |
| lineage2.1 | 2 |
| lineage4.4 | 1 |
| lineage4.5 | 1 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.8;La3 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4;lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 308 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045555 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323045 | HR-TB | None | ERR323043 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11049020 | Other | lineage4.8 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283021 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3283058 | Other | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797069 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR387051 | HR-TB | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4187671 | Other | lineage4.9;La1.8.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736839 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9787197 | Other | None | SRR1172728 | MDR-TB | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172234 | Other | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1184294 | HR-TB | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR16156832 | RR-TB | None | SRR1196768 | MDR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR15368973 | Other | None | SRR16156775 | Other | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17658565 | Other | lineage3 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR21675425 | HR-TB | lineage4.8 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969677 | HR-TB | lineage2 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR11081258 | Other | lineage4.8 | None | ERR176779 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815310 | Other | None | SRR3675221 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675236 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR176651 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR181887 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3675555 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4817060 | RR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4817069 | RR-TB | None | SRR3675572 | Other | None | ERR216965 | HR-TB | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2432997 | Other | lineage4.8 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4819051 | Other | lineage4 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819280 | Sensitive | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514821 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR2652925 | HR-TB | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR6045526 | HR-TB | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4821578 | Other | lineage4.1.2.1 | None |
|---|
