lineage | Count |
---|---|
lineage4.9 | 31 |
La1.8.1 | 1 |
lineage2 | 2 |
lineage3 | 2 |
lineage2.2.1 | 111 |
lineage4.3.4.2 | 1 |
4 | |
lineage4 | 7 |
lineage4.8 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.6.1.2 | 5 |
lineage4.1.1.3.1 | 1 |
lineage2.2.2 | 2 |
lineage4.4.1.1 | 1 |
lineage4.8.2 | 1 |
lineage4.3.3 | 2 |
lineage1.1.3 | 1 |
lineage5.1.1 | 1 |
lineage4.7 | 1 |
lineage4.1.2.1 | 1 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage4.2.1 | 1 |
lineage1.2.2.2 | 2 |
La1.7.X-unk4 | 1 |
lineage4.3.2.1;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 184 |
ID | Drug resistance | Lineage | Country iso2 | SRR1196545 | HR-TB | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR3675230 | RR-TB | lineage3 | None | SRR2101407 | Sensitive | lineage2.2.1 | None | SRR2101750 | Sensitive | lineage2.2.1 | None | ERR4814317 | Sensitive | lineage2.2.1 | None | ERR7363054 | Sensitive | lineage4.3.4.2 | None | ERR4815310 | Other | None | ERR4815471 | Other | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SAMN02585979 | MDR-TB | lineage2.2.1 | za | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SAMN02053800 | RR-TB | lineage2.2.1 | za | SAMN02053809 | RR-TB | lineage2.2.1 | za | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02350465 | MDR-TB | lineage2.2.1 | za | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR025840 | Sensitive | lineage2.2.1 | gb | SAMN02585891 | Sensitive | lineage2.2.1 | za | SRR4033549 | HR-TB | lineage2.2.2 | None | SAMN02585941 | Sensitive | lineage2.2.1 | za | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR2515352 | Sensitive | lineage2.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR2101518 | Sensitive | lineage2.2.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR025839 | Sensitive | lineage2.2.1 | gb | ERR2516100 | Other | lineage2.2.1 | None | ERR1023509 | Other | None | ERR4819933 | Other | lineage4.9 | None | ERR4821264 | Other | lineage1.1.3 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR2515151 | Sensitive | lineage2.2.1 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6896382 | Sensitive | lineage2.2.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6856074 | RR-TB | lineage2.2.1 | None | SRR6982089 | Sensitive | lineage2.2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6982128 | Sensitive | lineage2.2.1 | None | SRR6896296 | RR-TB | lineage2 | None | SRR6896570 | Sensitive | lineage2.2.1 | None | SRR6982237 | HR-TB | lineage2.2.1 | None | SRR6982436 | Sensitive | lineage2.2.1 | None | SRR6855752 | Sensitive | lineage2.2.1 | None | SRR6855710 | Sensitive | lineage2.2.1 | None | SRR6855762 | Sensitive | lineage2.2.1 | None | SRR6982366 | Sensitive | lineage2.2.1 | None | SRR6855763 | Sensitive | lineage2.2.1 | None | SRR6855764 | Sensitive | lineage2.2.1 | None | SRR6855870 | Sensitive | lineage2.2.1 | None | SRR6855781 | Sensitive | lineage2.2.1 | None | SRR6855805 | Sensitive | lineage2.2.1 | None | SRR6855839 | Sensitive | lineage2.2.1 | None | SRR6855943 | Sensitive | lineage2.2.1 | None | SRR6855911 | Sensitive | lineage2.2.1 | None | SRR6982008 | Sensitive | lineage2.2.1 | None | SRR6855938 | Sensitive | lineage2.2.1 | None | SRR9971306 | RR-TB | lineage2.2.1 | None | SRR6855978 | HR-TB | lineage2.2.1 | None | SRR6856027 | RR-TB | lineage2.2.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR9971259 | MDR-TB | lineage2.2.1 | None | SRR833057 | RR-TB | lineage2.2.1 | None | SRR9971322 | RR-TB | lineage2.2.1 | None | SRR833043 | RR-TB | lineage2.2.1 | None | ERR11488672 | MDR-TB | lineage2.2.1 | None | SRR833161 | Sensitive | None | SRR833141 | RR-TB | lineage2.2.1 | None | SRR833171 | RR-TB | lineage2.2.1 | None | ERR11488629 | MDR-TB | lineage2.2.1 | None | ERR11488685 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR9971078 | RR-TB | lineage2.2.1 | None | ERR025832 | Sensitive | lineage3 | None | SRR9971081 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR11488924 | Sensitive | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971214 | MDR-TB | lineage2.2.1 | None | SRR9971209 | RR-TB | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR4818694 | RR-TB | lineage2.2.1 | gb | ERR473334 | HR-TB | lineage4.9 | None | ERR11488628 | MDR-TB | lineage2.2.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11044815 | Sensitive | lineage1.2.2.2 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR11049092 | Sensitive | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515171 | Sensitive | lineage2.2.1 | za | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR8975372 | Sensitive | lineage2.2.1 | None | ERR2515369 | RR-TB | lineage2.2.1 | za | ERR2515442 | Sensitive | lineage2.2.1 | za | ERR2515799 | Sensitive | lineage2.2.1 | za | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR8976082 | Sensitive | lineage2.2.1 | None | ERR2515490 | Sensitive | lineage2.2.1 | za | ERR2516078 | RR-TB | lineage2.2.1 | za | ERR2515387 | RR-TB | lineage2.2.1 | za | ERR8975539 | Sensitive | lineage2.2.1 | None | ERR4808970 | RR-TB | lineage2.2.1 | za | ERR8975853 | MDR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR2515753 | Sensitive | lineage2.2.1 | za | ERR2515495 | Sensitive | lineage2.2.1 | za | ERR2516009 | Sensitive | lineage2.2.1 | za | ERR2515326 | Sensitive | lineage2.2.1 | za | ERR2515313 | Sensitive | lineage2.2.1 | za | ERR4830511 | RR-TB | lineage2.2.1 | za | ERR8975122 | Sensitive | lineage2.2.1 | None | ERR2515579 | Sensitive | lineage2.2.1 | za | ERR2515431 | Sensitive | lineage2.2.1 | za | ERR8975114 | Sensitive | lineage2.2.1 | None | ERR2516095 | Sensitive | lineage2.2.1 | za | ERR8975176 | Sensitive | lineage4.3.2.1;lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR7737813 | RR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR8975162 | Sensitive | lineage2.2.1 | None | SRR1019140 | MDR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR10315525 | Sensitive | lineage2.2.1 | None | SRR10315524 | Sensitive | lineage2.2.1 | None | SRR1173118 | Other | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR11349190 | Sensitive | lineage2.2.1 | None | SRR1140901 | MDR-TB | lineage2.2.1 | None | SRR10315678 | RR-TB | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1181210 | Sensitive | lineage2.2.1 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1180396 | MDR-TB | lineage2.2.1 | None | SRR1175090 | Other | lineage4.9 | None | SRR1180280 | Sensitive | lineage2.2.1 | None | SRR1180315 | MDR-TB | lineage2.2.1 | None | SRR1180324 | Sensitive | lineage2.2.1 | None | SRR1180442 | Sensitive | lineage2.2.1 | None | SRR1181034 | Sensitive | lineage2.2.1 | None | SRR1181257 | Sensitive | lineage2.2.1 | None | SRR1181356 | MDR-TB | lineage2.2.1 | None | SRR1181375 | Sensitive | lineage2.2.1 | None | SRR1183095 | Sensitive | lineage2.2.1 | None | SRR1181371 | MDR-TB | lineage2.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None |
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