lineage | Count |
---|---|
lineage2.2.1 | 133 |
lineage4.1.1.3 | 4 |
lineage4.3.3 | 14 |
lineage4.8 | 12 |
lineage4.2.1;lineage2.2 | 1 |
lineage4.3.4.2 | 3 |
lineage2.2.2 | 6 |
lineage4.2.1 | 6 |
lineage4.4.2 | 3 |
lineage3 | 5 |
lineage4.2.2.1 | 1 |
lineage4.3.2.1 | 2 |
lineage1.1.2 | 1 |
lineage4.1.2.1 | 3 |
lineage4.1 | 2 |
lineage4.3.4.1 | 5 |
lineage4.2.2.2;lineage1.1.2 | 1 |
lineage2.2.1.1 | 1 |
lineage4.1.2.1.1 | 7 |
lineage4.6.2.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.2.2 | 1 |
lineage3;lineage2.2.1 | 2 |
lineage4.3.2 | 1 |
lineage4.3.2.1;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 217 |
ID | Drug resistance | Lineage | Country iso2 | ERR4195619 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488513 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR3639794 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639780 | Pre-XDR-TB | lineage4.3.3 | None | ERR4553987 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276896 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829396 | Pre-XDR-TB | lineage4.8 | None | ERR11798669 | Pre-XDR-TB | lineage4.2.1;lineage2.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798559 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863919 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828870 | Pre-XDR-TB | lineage4.8 | None | ERR5863918 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863917 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863916 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863920 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863922 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863921 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863926 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863925 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863923 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863929 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863927 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863930 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863924 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863931 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863928 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863932 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863936 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863933 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863938 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863934 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864536 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863937 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863939 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863935 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864537 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864530 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864532 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864529 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864531 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864538 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864533 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864540 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864541 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864534 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865292 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864535 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864539 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866276 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865295 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866275 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865293 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865294 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865296 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865838 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866277 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866466 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5866467 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR24256127 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665763 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992685 | XDR-TB | lineage2.2.2 | None | ERR9121747 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665762 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992684 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992967 | XDR-TB | lineage2.2.2 | None | SRR10397096 | Pre-XDR-TB | lineage2.2.1 | None | SRR1011483 | Pre-XDR-TB | lineage4.3.3 | None | SRR10379912 | Pre-XDR-TB | lineage4.2.1 | None | SRR13232587 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062854 | Pre-XDR-TB | lineage4.3.3 | None | SRR13232585 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11567789 | Pre-XDR-TB | lineage4.4.2 | None | SRR13312518 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232723 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312546 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312519 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423559 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312520 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312544 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312545 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312517 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315994 | Pre-XDR-TB | lineage2.2.1 | None | SRR14088392 | Pre-XDR-TB | lineage3 | None | SRR13423557 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801542 | Pre-XDR-TB | lineage4.2.1 | None | SRR18715471 | Pre-XDR-TB | lineage2.2.1 | None | SRR16149121 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16156734 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR16156740 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316475 | Other | lineage2.2.1 | None | SRR15465760 | HR-TB | lineage1.1.2 | None | SRR16088475 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156759 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR25207037 | Pre-XDR-TB | lineage2.2.1 | None | SRR19428604 | HR-TB | lineage2.2.1 | None | SRR19276598 | Pre-XDR-TB | lineage4.3.3 | None | ERR11081165 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276916 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276933 | Pre-XDR-TB | lineage2.2.1 | None | SRR23086708 | Pre-XDR-TB | lineage4.8 | None | SRR22175246 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081405 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081368 | Other | lineage4.1.2.1 | None | SRR21887682 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806927 | Pre-XDR-TB | lineage4.8 | None | ERR11081492 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082449 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083165 | Pre-XDR-TB | lineage2.2.1 | None | SRR23861879 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806916 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR27107279 | Pre-XDR-TB | lineage4.3.3 | None | SRR24256213 | Other | lineage4.1 | None | SRR25206944 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207131 | Pre-XDR-TB | lineage2.2.1 | None | SRR24222957 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937138 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239741 | Other | lineage4.3.3 | None | SRR24255919 | Pre-XDR-TB | lineage4.3.3 | None | SRR23691390 | Other | lineage2.2.1 | None | SRR5341360 | Pre-XDR-TB | lineage3 | in | SRR5709839 | Pre-XDR-TB | lineage2.2.1 | th | SRR3544729 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824670 | Pre-XDR-TB | lineage2.2.1 | cn | SRR3105757 | Pre-XDR-TB | lineage3 | None | SRR3544743 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824669 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5341371 | Pre-XDR-TB | lineage3 | in | SRR671822 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5341441 | Pre-XDR-TB | lineage3 | in | ERR1035233 | Pre-XDR-TB | lineage4.3.4.1 | pt | ERR1034907 | Pre-XDR-TB | lineage4.3.4.1 | pt | SRR5341223 | Pre-XDR-TB | lineage4.2.2.2;lineage1.1.2 | in | SRR3743492 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743498 | Pre-XDR-TB | lineage4.2.1 | None | SRR847775 | Pre-XDR-TB | lineage4.3.3 | za | SRR6257033 | Pre-XDR-TB | lineage2.2.1 | ru | ERR1035100 | Pre-XDR-TB | lineage2.2.1.1 | vn | SAMN02350440 | Pre-XDR-TB | lineage4.3.3 | za | ERR228104 | Other | lineage2.2.1 | None | ERR757160 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR757165 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR760829 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR502895 | Pre-XDR-TB | lineage2.2.1 | None | ERR760598 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR760748 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | SRR2100469 | Other | lineage2.2.1 | None | SRR5152909 | Pre-XDR-TB | lineage2.2.1 | None | ERR760757 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR760795 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | SRR2024880 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5153848 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR7911385 | Pre-XDR-TB | lineage2.2.1 | us | ERR7911085 | Pre-XDR-TB | lineage4.1 | md | ERR7911699 | Pre-XDR-TB | lineage4.8 | za | ERR275214 | Pre-XDR-TB | lineage4.3.4.1 | pt | ERR7911407 | Pre-XDR-TB | lineage2.2.1 | us | SRR5266539 | Pre-XDR-TB | lineage2.2.1 | None | SRR5266560 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911557 | Pre-XDR-TB | lineage2.2.1 | za | SRR2024915 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2653107 | Pre-XDR-TB | lineage4.3.3 | None | SRR1166094 | Pre-XDR-TB | lineage4.8 | ro | ERR2517120 | Pre-XDR-TB | lineage4.8 | gb | ERR2653146 | Pre-XDR-TB | lineage4.3.3 | None | ERR229984 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4827740 | Pre-XDR-TB | lineage2.2.1 | None | SRR5761429 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822287 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651637 | Pre-XDR-TB | lineage4.4.2 | cn | ERR4798804 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799200 | HR-TB | lineage4.6.2.2 | in | ERR2517112 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4811481 | Other | lineage4.4.2 | cn | SRR6257024 | Pre-XDR-TB | lineage2.2.1 | None | SRR6650148 | Other | lineage1.1.3.1 | None | SRR6257059 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4830504 | Pre-XDR-TB | lineage2.2.2 | None | ERR4799578 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796795 | Pre-XDR-TB | lineage4.2.2 | in | SRR6356929 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356946 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR8651661 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811302 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4800567 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799932 | Pre-XDR-TB | lineage2.2.1 | in | ERR4829404 | Other | lineage4.8 | it | ERR4813211 | Pre-XDR-TB | lineage4.8 | pe | SRR6916544 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR5917667 | Pre-XDR-TB | lineage4.3.3 | by | ERR4872299 | Pre-XDR-TB | lineage4.2.1 | None | ERR3287830 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4812762 | Other | lineage4.3.2 | pe | SRR6831774 | Pre-XDR-TB | lineage2.2.1 | None | SRR924224 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131041 | Other | lineage4.8 | None | SRR9971308 | Pre-XDR-TB | lineage2.2.2 | None | SRR7517722 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516321 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516405 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738528 | Pre-XDR-TB | lineage4.8 | None | SRR7517736 | Pre-XDR-TB | lineage2.2.1 | None | ERR12307396 | Pre-XDR-TB | lineage2.2.1 | None | SRR7652978 | Pre-XDR-TB | lineage2.2.1 | None | SRR7653024 | Pre-XDR-TB | lineage2.2.1 | None | SRR7781495 | Pre-XDR-TB | lineage4.8 | None | DRR130187 | Pre-XDR-TB | lineage4.3.4.1 | None | DRR130087 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR11488546 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11465157 | Pre-XDR-TB | lineage4.3.2.1;lineage2.2.1 | None | ERR10748267 | Pre-XDR-TB | lineage2.2.2 | None | ERR10762320 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748431 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762431 | Pre-XDR-TB | lineage4.2.1 | None | ERR10762317 | Pre-XDR-TB | lineage4.2.1 | None | ERR10762321 | Pre-XDR-TB | lineage2.2.1 | None |
---|