Rv3596c - c.792C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
60 Sensitive
8 RR-TB
28 HR-TB
5 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 5 |
| lineage4 | 1 |
| lineage4.9 | 82 |
| lineage2.2.1 | 9 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage7 | 3 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.8.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.8 | 3 |
| lineage4.4.1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 1 | |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| lineage6 | 1 |
| La1.7.1 | 1 |
| lineage4.4 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 151 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11252612 | Other | La3;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR2660539 | Other | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR4811198 | Sensitive | lineage2.2.1 | cn | ERR4769442 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR3675522 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR3283032 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR6046485 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None |
|---|
