ERR13261365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747019
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797191
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799329
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800523
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175217
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797507
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799671
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800068
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29230897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266710
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797499
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798018
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799251
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799480
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799456
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266572
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266660
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864812
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28351311
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797740
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798029
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR9613554
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25827714
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5865048
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13262013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13262048
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266704
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772685
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796576
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796568
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796791
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR24709969
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798069
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6824458
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4799044
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR3544740
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28044392
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797653
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796372
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799066
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799192
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827607
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR28045945
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798138
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800463
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR26399433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810472
|
MDR-TB
|
lineage4.5
|
cn
|
SRR13312537
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827546
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830984
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR1173257
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR25827666
|
MDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
ERR13266942
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267009
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267027
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800241
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798935
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799648
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827326
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR6824454
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4827794
|
RR-TB
|
lineage4.3.3
|
None
|
ERR4828636
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4797827
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799406
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262030
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10303294
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797932
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28045556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798075
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7975661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046242
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774129
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR13312533
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4796487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747030
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827513
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798027
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799805
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800164
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830959
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13261253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911742
|
MDR-TB
|
lineage4.3.3
|
us
|
ERR234608
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR5341264
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR9125476
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797946
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798473
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798653
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827642
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799517
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797772
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796767
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351562
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162854
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827515
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797787
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
in
|
ERR4799651
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800659
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799510
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830948
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796926
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR18593224
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799670
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797582
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797980
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424751
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865049
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798669
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796390
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797526
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175218
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799183
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827641
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827746
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827664
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260976
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266482
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796804
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797325
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797955
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799098
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799370
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4799773
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799679
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799880
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827553
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3
|
None
|
SRR25827732
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266069
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312534
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13312538
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799142
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827476
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045067
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266413
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044181
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799910
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800364
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13290442
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
SRR25827484
|
Pre-XDR-TB
|
lineage1;lineage2.2.1;lineage3;lineage4
|
None
|
ERR4797682
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800481
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7162976
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665650
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261259
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798982
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800555
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28045389
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267016
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6964536
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4797876
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798052
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798766
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797295
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797366
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797373
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR5864808
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796724
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796840
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796931
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796959
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799663
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
SRR25827882
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256350
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827815
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827558
|
XDR-TB
|
lineage2.2.1.1;lineage2.2.1.2;lineage3
|
None
|
ERR551939
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR473889
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR13266960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517013
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4797995
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864809
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800593
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7585401
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797883
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797608
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266946
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799822
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799975
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR550847
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798534
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827875
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3
|
None
|
ERR4799581
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799751
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797351
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290444
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
ERR4830941
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799763
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796964
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798226
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799298
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799238
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1144811
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
ERR13266143
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797512
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1146349
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
ERR4423541
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4800696
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827686
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13262022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312535
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864803
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26937016
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796897
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799932
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799957
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800063
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13312531
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830992
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800229
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175193
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798190
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796885
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827633
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR5153270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799426
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799603
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261972
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827405
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR6052032
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR22175254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796527
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827363
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796861
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR18149459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796945
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1174279
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13266988
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798115
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
in
|
SRR1723798
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4799914
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799761
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800071
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830966
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796726
|
MDR-TB
|
lineage2.2.1
|
in
|
SAMN02598983
|
MDR-TB
|
lineage1.1.2
|
in
|
ERR5864810
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4830327
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR18593227
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800578
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796983
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799271
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800230
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797167
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16088527
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045456
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864811
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4796471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR752199
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4798941
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797691
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798527
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799689
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797880
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800034
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827364
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4800095
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266409
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827811
|
Other
|
lineage4.3.3;lineage4.8
|
None
|
ERR13267088
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799715
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797870
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798087
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799410
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799474
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR7339135
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7585402
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2199779
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR7911478
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR550911
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516825
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR5864806
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827430
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552040
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175259
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797783
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798068
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261223
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290445
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
ERR4796892
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797601
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28858427
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799582
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799779
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266983
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262084
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639771
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796742
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797688
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261375
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800315
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799515
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR2100432
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796648
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28351584
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4797732
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798414
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798996
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5153218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266914
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800583
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
ERR4796427
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800317
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798561
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865047
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830173
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045817
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796982
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10397238
|
Pre-XDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
SRR11662247
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10305990
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827585
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827671
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13261224
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797680
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798354
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827710
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798475
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797400
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797776
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799977
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4800426
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR8366603
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830136
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864814
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24222957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088146
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798559
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799619
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799824
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798991
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR15014685
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175185
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28351471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312539
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799276
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827793
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797965
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR20969856
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266570
|
HR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
SRR10306021
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827720
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797735
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798079
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4423542
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR25827819
|
XDR-TB
|
lineage2.2.1.2
|
None
|
ERR13261372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800027
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28046114
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055940
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR4797643
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
ERR4799566
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799740
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799622
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799952
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797578
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266104
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4798862
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266706
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266629
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2660453
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10219878
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798499
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797485
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827524
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage4
|
None
|
SRR6257019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799792
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29051483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796789
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797304
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799274
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830988
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796785
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796851
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798691
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798785
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799028
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799922
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800517
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800574
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800300
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516511
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR25827562
|
XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR4798901
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21576673
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797310
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798886
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800062
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799723
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827407
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR7585404
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797007
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799088
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827665
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4800612
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22249446
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827355
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4800509
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR11662393
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887735
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5341240
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR10430319
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153332
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797759
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864804
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13312532
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1166108
|
MDR-TB
|
lineage4.2.1
|
ro
|
SRR3544717
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25207095
|
MDR-TB
|
lineage4.5
|
None
|
SRR28045578
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827624
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR22424924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266707
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799745
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR7911302
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR13266545
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4796682
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6824339
|
MDR-TB
|
lineage2.2.1;lineage4.2.2
|
cn
|
ERR13267058
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797445
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800604
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829106
|
MDR-TB
|
lineage3.1.1
|
dj
|
ERR4797777
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796992
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799089
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21675841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800028
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2984798
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4800038
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864813
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797152
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797317
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797522
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798119
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796437
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796697
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797660
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800549
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799916
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831843
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR28351578
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28044451
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044927
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046120
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044686
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864807
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28044935
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510403
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR25827455
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR13266640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539387
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798150
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772748
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088214
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290443
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1.1
|
None
|
ERR4798733
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7645963
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796466
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799408
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827461
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798256
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516536
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR4798615
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797303
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798931
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799524
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175246
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831004
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR8665649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266742
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829397
|
MDR-TB
|
lineage3
|
None
|
ERR5865249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796916
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798840
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290807
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798403
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8774131
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR22175221
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864805
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798655
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798656
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827802
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3
|
None
|
ERR4800573
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799453
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798073
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266909
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799548
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799899
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827761
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799435
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799558
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28858652
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827643
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28351586
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351466
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351364
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045236
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261345
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351167
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045577
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827389
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR28351174
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046111
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045458
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797119
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29538925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800331
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772600
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830091
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30180347
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800556
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800484
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799841
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR5865247
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827644
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR10225448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831034
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22175252
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4797592
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797356
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR4800614
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799351
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796738
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798408
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798852
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800420
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28045008
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515248
|
RR-TB
|
lineage4.1.1.3
|
za
|
ERR4813863
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4799823
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262021
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797080
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266532
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796257
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796264
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796438
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800475
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351490
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266582
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830979
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR1023401
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797652
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797662
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827443
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6052040
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR29772841
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828141
|
Other
|
lineage4.3.3
|
None
|
ERR7737830
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797180
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9119228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163230
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827390
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR8442761
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797904
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR12416825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26937082
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797725
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799760
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865248
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827545
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266730
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260941
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796329
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7162979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797560
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796665
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262117
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16058673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312530
|
Pre-XDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
ERR4798110
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800235
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR18715038
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827788
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827563
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR13267062
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351256
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351545
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045446
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045654
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799074
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13266735
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772786
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799747
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|