Run ID: SRR28351584
Sample name:
Date: 2024-10-04T22:40:52.413227
Number of reads: 1636259
Percentage reads mapped: 94.8
Median coverage: 41.0
Strain: lineage2.2.1
Spoligotype:
Drug-resistance: HR-TB
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage2 | East-Asian | RD105 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | RD105;RD207;RD181 | 0.99 |
lineage2.2 | East-Asian (Beijing) | RD105;RD207 | 0.99 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | inhA | c.-777C>T | Assoc w R | Alias fabG1_c.-15C>T. Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance) |
katG | p.Ser315Thr | Assoc w R | High-level resistance | |
ethambutol | embA | c.-11C>A | Uncertain significance | Mutation from literature |
embB | p.Met306Val | Assoc w R | ||
pyrazinamide | pncA | p.Leu27Pro | Assoc w R | |
streptomycin | rpsL | p.Lys43Arg | Assoc w R | |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | inhA | c.-777C>T | Assoc w R | Alias fabG1_c.-15C>T |
ethA | c.448_481delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT | Assoc w R | ||
c.449_481delGATTCGCCGGCTCGGAGGATTTCGTCGGGCCGA | Mutation from literature | |||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin | Assoc w R | |
inhA | 1673425 | c.-777C>T | upstream_gene_variant | 1.0 | ethionamide | Assoc w R | Alias fabG1_c.-15C>T |
isoniazid | Assoc w R | Alias fabG1_c.-15C>T. Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance) | |||||
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid | Assoc w R | High-level resistance |
pncA | 2289162 | p.Leu27Pro | missense_variant | 1.0 | pyrazinamide | Assoc w R | |
embA | 4243222 | c.-11C>A | upstream_gene_variant | 1.0 | ethambutol | Uncertain significance | Mutation from literature |
embB | 4247429 | p.Met306Val | missense_variant | 0.83 | ethambutol | Assoc w R | |
ethA | 4326992 | c.448_481delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT | frameshift_variant | 1.0 | ethionamide | Assoc w R | |
ethA | 4326992 | c.449_481delGATTCGCCGGCTCGGAGGATTTCGTCGGGCCGA | disruptive_inframe_deletion | 1.0 | ethionamide | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
dnaA | 876 | c.876C>G | synonymous_variant | 0.36 | isoniazid | |
dnaA | 877 | c.877T>C | synonymous_variant | 0.37 | isoniazid | |
dnaA | 885 | c.885T>C | synonymous_variant | 0.39 | isoniazid | |
dnaA | 897 | c.897A>G | synonymous_variant | 0.41 | isoniazid | |
dnaA | 909 | c.909A>C | synonymous_variant | 0.39 | isoniazid | Not assoc w R - Interim |
dnaA | 912 | c.912T>C | synonymous_variant | 0.39 | isoniazid | |
dnaA | 918 | c.918C>G | synonymous_variant | 0.39 | isoniazid | |
dnaA | 921 | c.921A>G | synonymous_variant | 0.41 | isoniazid | Not assoc w R - Interim |
dnaA | 927 | c.927G>A | synonymous_variant | 0.42 | isoniazid | |
dnaA | 936 | c.936C>G | synonymous_variant | 0.47 | isoniazid | |
dnaA | 939 | c.939C>T | synonymous_variant | 0.48 | isoniazid | |
dnaA | 942 | c.942C>G | synonymous_variant | 0.48 | isoniazid | |
dnaA | 945 | c.945G>A | synonymous_variant | 0.47 | isoniazid | |
dnaA | 952 | c.952C>T | synonymous_variant | 0.47 | isoniazid | |
dnaA | 955 | c.955_957delAGAinsCGC | synonymous_variant | 0.45 | isoniazid | |
dnaA | 966 | c.966T>C | synonymous_variant | 0.44 | isoniazid | |
dnaA | 984 | c.984T>C | synonymous_variant | 0.48 | isoniazid | Not assoc w R - Interim |
dnaA | 990 | c.990A>T | synonymous_variant | 0.41 | isoniazid | |
dnaA | 993 | c.993A>G | synonymous_variant | 0.41 | isoniazid | |
dnaA | 996 | c.996A>G | synonymous_variant | 0.41 | isoniazid | |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.71 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8339 | c.1038A>C | synonymous_variant | 0.66 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8340 | p.Ala347Ser | missense_variant | 0.66 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 8354 | c.1053G>C | synonymous_variant | 0.67 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8357 | c.1056G>C | synonymous_variant | 0.68 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8363 | c.1062C>G | synonymous_variant | 0.69 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8372 | c.1071G>C | synonymous_variant | 0.7 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8382 | p.Leu361Met | missense_variant | 0.7 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8391 | p.Tyr364His | missense_variant | 0.7 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.71 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8402 | c.1101C>T | synonymous_variant | 0.71 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.66 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.61 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8429 | c.1128C>G | synonymous_variant | 0.61 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8453 | c.1152A>C | synonymous_variant | 0.33 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R | |||||
ccsA | 620583 | c.693G>C | synonymous_variant | 0.34 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620589 | c.699G>C | synonymous_variant | 0.38 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620598 | c.708C>G | synonymous_variant | 0.39 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620604 | c.714C>G | synonymous_variant | 0.41 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620607 | c.717T>G | synonymous_variant | 0.42 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620613 | c.723C>G | synonymous_variant | 0.42 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620625 | c.735A>C | synonymous_variant | 0.5 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620625 | p.Ile245Met | missense_variant | 0.5 | kanamycin | Uncertain significance |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
ccsA | 620649 | c.759A>G | synonymous_variant | 0.65 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620661 | c.771C>G | synonymous_variant | 0.67 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620694 | c.804C>G | synonymous_variant | 0.68 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620698 | p.Val270Ile | missense_variant | 0.68 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620712 | c.822G>C | synonymous_variant | 0.69 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620721 | c.831G>C | synonymous_variant | 0.69 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
Rv0565c | 657081 | c.390G>A | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
Rv0565c | 657142 | p.Arg110His | missense_variant | 1.0 | ethionamide | Uncertain significance |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 760244 | c.438G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 760253 | c.447T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.31 | rifampicin | |
rpoB | 760316 | c.510C>G | synonymous_variant | 0.33 | rifampicin | |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.36 | rifampicin | |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoB | 760355 | c.549G>A | synonymous_variant | 0.35 | rifampicin | |
rpoB | 760356 | p.Thr184Ser | missense_variant | 0.37 | rifampicin | Uncertain significance |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.82 | rifampicin | Not assoc w R - Interim |
rpoB | 760649 | c.843G>C | synonymous_variant | 0.81 | rifampicin | |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.81 | rifampicin | Not assoc w R - Interim |
rpoB | 760658 | c.852G>A | synonymous_variant | 0.81 | rifampicin | |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.82 | rifampicin | Not assoc w R - Interim |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.86 | rifampicin | |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.86 | rifampicin | Not assoc w R - Interim |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.85 | rifampicin | Not assoc w R - Interim |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.84 | rifampicin | Not assoc w R - Interim |
rpoB | 760721 | c.915C>G | synonymous_variant | 0.81 | rifampicin | |
rpoB | 760724 | c.918T>C | synonymous_variant | 0.81 | rifampicin | Not assoc w R - Interim |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.82 | rifampicin | Not assoc w R - Interim |
rpoB | 760748 | c.942C>G | synonymous_variant | 0.77 | rifampicin | |
rpoB | 760755 | p.His317Asn | missense_variant | 0.71 | rifampicin | |
rpoB | 760763 | c.957C>T | synonymous_variant | 0.67 | rifampicin | |
rpoB | 760769 | c.963C>G | synonymous_variant | 0.66 | rifampicin | |
rpoB | 760775 | c.969G>C | synonymous_variant | 0.63 | rifampicin | |
rpoB | 760776 | c.970_972delTCGinsAGC | synonymous_variant | 0.62 | rifampicin | |
rpoB | 760805 | c.999G>C | synonymous_variant | 0.54 | rifampicin | |
rpoB | 760808 | c.1002C>G | synonymous_variant | 0.51 | rifampicin | |
rpoB | 761318 | c.1512G>C | synonymous_variant | 0.43 | rifampicin | Not assoc w R - Interim |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoB | 761345 | c.1539G>C | synonymous_variant | 0.55 | rifampicin | |
rpoB | 761354 | c.1548C>T | synonymous_variant | 0.48 | rifampicin | |
rpoB | 761357 | c.1551G>C | synonymous_variant | 0.55 | rifampicin | |
rpoB | 761360 | c.1554T>C | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoB | 761362 | p.Ser519Thr | missense_variant | 0.6 | rifampicin | |
rpoB | 761369 | p.Glu521Asp | missense_variant | 0.6 | rifampicin | |
rpoB | 761374 | p.Val523Glu | missense_variant | 0.58 | rifampicin | |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.7 | rifampicin | |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.85 | rifampicin | |
rpoB | 761669 | c.1863C>T | synonymous_variant | 0.84 | rifampicin | |
rpoB | 761690 | c.1884G>C | synonymous_variant | 0.87 | rifampicin | |
rpoB | 761705 | c.1899C>T | synonymous_variant | 0.88 | rifampicin | |
rpoB | 761723 | c.1917_1919delAGAinsC | frameshift_variant&missense_variant | 0.87 | rifampicin | |
rpoB | 761747 | c.1941_1944delGTCGinsCAGT | synonymous_variant | 0.88 | rifampicin | |
rpoB | 761760 | p.Ile652Val | missense_variant | 0.87 | rifampicin | |
rpoB | 761765 | c.1959T>G | synonymous_variant | 0.86 | rifampicin | |
rpoB | 761772 | p.His656Ala | missense_variant | 0.86 | rifampicin | |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.86 | rifampicin | |
rpoB | 761791 | p.Arg662His | missense_variant | 0.85 | rifampicin | |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.76 | rifampicin | |
rpoB | 762813 | p.Met1003Val | missense_variant | 0.62 | rifampicin | |
rpoB | 762820 | p.Phe1005Tyr | missense_variant | 0.62 | rifampicin | |
rpoB | 762827 | c.3021G>C | synonymous_variant | 0.63 | rifampicin | Not assoc w R - Interim |
rpoC | 762851 | c.-519C>T | upstream_gene_variant | 0.68 | rifampicin | |
rpoB | 762857 | c.3051C>G | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoB | 762863 | c.3057T>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.72 | rifampicin | Uncertain significance |
rpoB | 762923 | c.3117C>G | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoB | 762929 | c.3123G>T | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R |
rpoC | 766488 | p.Pro1040Arg | missense_variant | 1.0 | rifampicin | Uncertain significance |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 775892 | c.2589C>T | synonymous_variant | 0.79 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775904 | c.2577G>A | synonymous_variant | 0.83 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775915 | p.Ala856Ser | missense_variant | 0.81 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775916 | c.2565T>A | synonymous_variant | 0.83 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775922 | c.2559G>T | synonymous_variant | 0.83 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775925 | c.2556G>C | synonymous_variant | 0.84 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775937 | c.2544G>C | synonymous_variant | 0.87 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775961 | c.2520C>G | synonymous_variant | 0.87 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775975 | c.2506T>C | synonymous_variant | 0.84 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775981 | p.Leu834Met | missense_variant | 0.84 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776000 | c.2481G>C | synonymous_variant | 0.76 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776009 | c.2472A>G | synonymous_variant | 0.73 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776017 | p.Ile822Phe | missense_variant | 0.72 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776030 | c.2451G>T | synonymous_variant | 0.67 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776039 | c.2442C>G | synonymous_variant | 0.67 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776048 | c.2433G>C | synonymous_variant | 0.65 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776053 | c.2428T>C | synonymous_variant | 0.64 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776057 | c.2424G>C | synonymous_variant | 0.61 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776060 | c.2421C>G | synonymous_variant | 0.6 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776072 | c.2409C>G | synonymous_variant | 0.5 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776075 | c.2406C>G | synonymous_variant | 0.47 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776081 | c.2400G>C | synonymous_variant | 0.43 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 | bedaquiline | |
clofazimine | ||||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.33 | streptomycin | |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.41 | streptomycin | |
rpsL | 781859 | c.300T>G | synonymous_variant | 0.3 | streptomycin | |
rpsL | 781862 | c.303G>C | synonymous_variant | 0.3 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.31 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.31 | streptomycin | |
rpsL | 781880 | c.321C>G | synonymous_variant | 0.31 | streptomycin | |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.3 | streptomycin | |
rpsL | 781898 | c.339A>C | synonymous_variant | 0.24 | streptomycin | |
rplC | 801109 | c.301T>C | synonymous_variant | 0.23 | linezolid | Not assoc w R - Interim |
rplC | 801117 | c.309G>C | synonymous_variant | 0.49 | linezolid | |
rplC | 801132 | c.324T>C | synonymous_variant | 0.57 | linezolid | |
rplC | 801147 | c.339T>C | synonymous_variant | 0.57 | linezolid | |
rplC | 801150 | c.342G>C | synonymous_variant | 0.58 | linezolid | |
rplC | 801153 | c.345G>C | synonymous_variant | 0.58 | linezolid | |
rplC | 801156 | c.348T>C | synonymous_variant | 0.61 | linezolid | |
rplC | 801160 | c.352_353delTCinsAG | synonymous_variant | 0.6 | linezolid | |
rplC | 801171 | c.363A>G | synonymous_variant | 0.63 | linezolid | |
rplC | 801174 | c.366T>C | synonymous_variant | 0.61 | linezolid | |
rplC | 801210 | c.402T>C | synonymous_variant | 0.61 | linezolid | |
rplC | 801220 | c.412_414delAGTinsTCC | synonymous_variant | 0.58 | linezolid | |
rplC | 801228 | c.420T>C | synonymous_variant | 0.57 | linezolid | |
rplC | 801231 | c.423C>G | synonymous_variant | 0.55 | linezolid | |
rplC | 801237 | c.429G>C | synonymous_variant | 0.55 | linezolid | |
rplC | 801249 | c.441T>G | synonymous_variant | 0.52 | linezolid | |
rplC | 801258 | c.450C>G | synonymous_variant | 0.48 | linezolid | |
rplC | 801264 | c.456C>T | synonymous_variant | 0.33 | linezolid | |
rplC | 801267 | c.459A>C | synonymous_variant | 0.24 | linezolid | |
Rv1129c | 1254562 | c.-28T>C | upstream_gene_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
isoniazid | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
fbiC | 1303681 | c.751T>C | synonymous_variant | 0.67 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303695 | c.765T>C | synonymous_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303708 | c.778T>C | synonymous_variant | 0.82 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303728 | c.798G>A | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303731 | c.801A>G | synonymous_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303732 | p.Ser268Ala | missense_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303740 | c.810C>G | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303746 | p.Asp272Glu | missense_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303749 | c.819G>C | synonymous_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303750 | p.Leu274Ile | missense_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303755 | c.825T>C | synonymous_variant | 0.83 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303761 | c.831T>C | synonymous_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303764 | c.834C>G | synonymous_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303765 | p.Lys279Arg | missense_variant | 0.84 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303788 | c.858T>C | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303789 | p.Ile287Val | missense_variant | 0.86 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303794 | c.864A>G | synonymous_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303818 | c.888C>G | synonymous_variant | 0.83 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303961 | p.Arg344Leu | missense_variant | 0.52 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303969 | p.Val347Ile | missense_variant | 0.53 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303998 | c.1068T>G | synonymous_variant | 0.57 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304001 | c.1071C>G | synonymous_variant | 0.56 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304004 | c.1074A>G | synonymous_variant | 0.57 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304008 | c.1078T>C | synonymous_variant | 0.59 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304013 | c.1083G>C | synonymous_variant | 0.6 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304016 | c.1086C>T | synonymous_variant | 0.58 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304022 | c.1092T>C | synonymous_variant | 0.61 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304031 | c.1101C>G | synonymous_variant | 0.63 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304034 | c.1104A>G | synonymous_variant | 0.63 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304040 | c.1110C>G | synonymous_variant | 0.63 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304049 | c.1119T>G | synonymous_variant | 0.6 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304050 | c.1120_1122delTTGinsCTC | synonymous_variant | 0.6 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304059 | c.1129C>T | synonymous_variant | 0.59 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304064 | c.1134G>C | synonymous_variant | 0.59 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304067 | c.1137G>C | synonymous_variant | 0.59 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304092 | p.Met388Leu | missense_variant | 0.56 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304475 | c.1545G>C | synonymous_variant | 0.53 | pretomanid | |
delamanid | ||||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1304481 | c.1551T>G | synonymous_variant | 0.62 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304499 | c.1569T>G | synonymous_variant | 0.67 | pretomanid | |
delamanid | ||||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1304508 | p.Glu526Asp | missense_variant | 0.67 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304511 | c.1581C>G | synonymous_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304514 | c.1584T>C | synonymous_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304520 | c.1590A>G | synonymous_variant | 0.69 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304526 | c.1596T>C | synonymous_variant | 0.7 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304529 | c.1599T>C | synonymous_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304530 | p.Ser534Ala | missense_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304541 | c.1611C>G | synonymous_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304544 | c.1614T>C | synonymous_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304546 | p.Val539Ala | missense_variant | 0.68 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304559 | p.Glu543Asp | missense_variant | 0.71 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304562 | c.1632G>C | synonymous_variant | 0.71 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304565 | c.1635C>G | synonymous_variant | 0.72 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.76 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304580 | c.1650T>C | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304637 | c.1707G>A | synonymous_variant | 0.86 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.86 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304646 | c.1716T>C | synonymous_variant | 0.88 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304658 | c.1728C>G | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304665 | c.1735C>T | synonymous_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304670 | c.1740G>C | synonymous_variant | 0.84 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304671 | p.Val581Thr | missense_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304675 | p.Gly582Ala | missense_variant | 0.85 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304682 | c.1752C>G | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304694 | c.1764A>G | synonymous_variant | 0.88 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304706 | c.1776C>T | synonymous_variant | 0.87 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.88 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304727 | c.1797A>G | synonymous_variant | 0.9 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304742 | c.1812T>C | synonymous_variant | 0.84 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304748 | c.1818T>C | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304751 | c.1821C>G | synonymous_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304755 | c.1825_1827delCTAinsTTG | synonymous_variant | 0.79 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304763 | c.1833C>G | synonymous_variant | 0.8 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304769 | c.1839C>T | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304772 | c.1842C>T | synonymous_variant | 0.81 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1304784 | c.1854T>C | synonymous_variant | 0.82 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304787 | c.1857T>C | synonymous_variant | 0.82 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304790 | c.1860C>G | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304808 | c.1878C>G | synonymous_variant | 0.82 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.81 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.82 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304829 | c.1899T>C | synonymous_variant | 0.78 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304830 | c.1900_1901delTCinsAG | synonymous_variant | 0.77 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304835 | c.1905G>C | synonymous_variant | 0.78 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304868 | c.1938G>C | synonymous_variant | 0.64 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305117 | c.2187T>C | synonymous_variant | 0.23 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305126 | c.2196T>C | synonymous_variant | 0.41 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1305150 | c.2220C>G | synonymous_variant | 0.39 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305154 | c.2224T>C | synonymous_variant | 0.42 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305159 | c.2229G>T | synonymous_variant | 0.41 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305172 | p.Asn748Ser | missense_variant | 0.37 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305177 | c.2247A>C | synonymous_variant | 0.36 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305181 | c.2251T>C | synonymous_variant | 0.36 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305186 | c.2256C>T | synonymous_variant | 0.36 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305195 | c.2265T>C | synonymous_variant | 0.37 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305197 | p.Ala756Gly | missense_variant | 0.37 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305204 | c.2274C>T | synonymous_variant | 0.36 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305210 | c.2280G>C | synonymous_variant | 0.36 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305213 | c.2283C>G | synonymous_variant | 0.37 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305215 | p.Ser762Thr | missense_variant | 0.37 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305219 | c.2289T>C | synonymous_variant | 0.38 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305231 | c.2301C>G | synonymous_variant | 0.39 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305237 | c.2307A>G | synonymous_variant | 0.39 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305240 | c.2310T>C | synonymous_variant | 0.39 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305243 | c.2313T>G | synonymous_variant | 0.41 | pretomanid | |
delamanid | ||||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1305244 | c.2314T>C | synonymous_variant | 0.41 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305259 | c.2329T>C | synonymous_variant | 0.38 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
sigE | 1364919 | c.507T>C | synonymous_variant | 0.6 | pyrazinamide | |
sigE | 1364950 | p.Ala180Ser | missense_variant | 0.36 | pyrazinamide | |
sigE | 1364956 | c.544C>T | synonymous_variant | 0.34 | pyrazinamide | |
sigE | 1364960 | p.Gly183Ala | missense_variant | 0.33 | pyrazinamide | |
sigE | 1364964 | c.552T>C | synonymous_variant | 0.33 | pyrazinamide | Not assoc w R - Interim |
sigE | 1364967 | c.555C>T | synonymous_variant | 0.34 | pyrazinamide | |
sigE | 1364970 | c.558G>T | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
sigE | 1364976 | c.564T>C | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
sigE | 1364980 | c.568T>C | synonymous_variant | 0.33 | pyrazinamide | |
sigE | 1364984 | p.Ala191Asp | missense_variant | 0.33 | pyrazinamide | |
sigE | 1364988 | c.576G>A | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
sigE | 1364992 | p.Pro194Ala | missense_variant | 0.39 | pyrazinamide | |
sigE | 1364997 | c.585G>C | synonymous_variant | 0.4 | pyrazinamide | |
sigE | 1365003 | c.591T>C | synonymous_variant | 0.41 | pyrazinamide | |
sigE | 1365006 | c.594T>C | synonymous_variant | 0.41 | pyrazinamide | |
sigE | 1365012 | c.600G>A | synonymous_variant | 0.41 | pyrazinamide | |
sigE | 1365019 | c.607C>T | synonymous_variant | 0.41 | pyrazinamide | |
sigE | 1365024 | c.612T>C | synonymous_variant | 0.43 | pyrazinamide | |
sigE | 1365036 | c.624T>C | synonymous_variant | 0.44 | pyrazinamide | |
sigE | 1365042 | c.630G>C | synonymous_variant | 0.44 | pyrazinamide | |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 | streptomycin | Uncertain significance |
pyrazinamide | Uncertain significance | |||||
isoniazid | Uncertain significance | |||||
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.26 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.7 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.53 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1475381 | n.1724G>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | |
linezolid | ||||||
rrl | 1475647 | n.1990G>C | non_coding_transcript_exon_variant | 0.3 | capreomycin | |
linezolid | ||||||
inhA | 1673607 | c.-595T>C | upstream_gene_variant | 0.26 | isoniazid | |
ethionamide | ||||||
inhA | 1673619 | c.-583T>C | upstream_gene_variant | 0.45 | isoniazid | |
ethionamide | ||||||
inhA | 1673634 | c.-568C>T | upstream_gene_variant | 0.42 | isoniazid | |
ethionamide | ||||||
inhA | 1673636 | c.-566_-565delACinsCG | upstream_gene_variant | 0.41 | isoniazid | |
ethionamide | ||||||
inhA | 1673646 | c.-556T>C | upstream_gene_variant | 0.42 | isoniazid | |
ethionamide | ||||||
inhA | 1673658 | c.-544G>C | upstream_gene_variant | 0.45 | isoniazid | |
ethionamide | ||||||
inhA | 1673660 | c.-542C>A | upstream_gene_variant | 0.46 | isoniazid | |
ethionamide | ||||||
inhA | 1673664 | c.-538A>C | upstream_gene_variant | 0.48 | isoniazid | |
ethionamide | ||||||
inhA | 1673667 | c.-535A>G | upstream_gene_variant | 0.48 | isoniazid | |
ethionamide | ||||||
inhA | 1673670 | c.-532G>A | upstream_gene_variant | 0.48 | isoniazid | |
ethionamide | ||||||
inhA | 1673679 | c.-523T>G | upstream_gene_variant | 0.5 | isoniazid | |
ethionamide | ||||||
inhA | 1673682 | c.-520G>C | upstream_gene_variant | 0.5 | isoniazid | Uncertain significance |
ethionamide | Uncertain significance | |||||
inhA | 1673710 | c.-492_-490delCTAinsATC | upstream_gene_variant | 0.44 | isoniazid | |
ethionamide | ||||||
inhA | 1674462 | c.261G>A | synonymous_variant | 0.66 | isoniazid | |
ethionamide | ||||||
inhA | 1674471 | c.270G>C | synonymous_variant | 0.8 | isoniazid | |
ethionamide | ||||||
inhA | 1674480 | c.279T>C | synonymous_variant | 0.83 | isoniazid | |
ethionamide | ||||||
inhA | 1674486 | c.285T>C | synonymous_variant | 0.84 | isoniazid | |
ethionamide | ||||||
inhA | 1674489 | c.288G>C | synonymous_variant | 0.83 | isoniazid | |
ethionamide | ||||||
inhA | 1674507 | c.306G>C | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674534 | c.333G>C | synonymous_variant | 0.94 | isoniazid | Not assoc w R - Interim |
ethionamide | ||||||
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.95 | isoniazid | |
ethionamide | ||||||
inhA | 1674549 | c.348G>C | synonymous_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674550 | p.Ser117Ala | missense_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674573 | c.372G>C | synonymous_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674576 | c.375T>C | synonymous_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674579 | c.378G>C | synonymous_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674582 | c.381T>C | synonymous_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674585 | c.384T>G | synonymous_variant | 0.95 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
inhA | 1674589 | p.Met130Leu | missense_variant | 0.96 | isoniazid | |
ethionamide | ||||||
inhA | 1674624 | c.423A>C | synonymous_variant | 0.95 | isoniazid | |
ethionamide | ||||||
inhA | 1674627 | c.426T>C | synonymous_variant | 0.95 | isoniazid | |
ethionamide | ||||||
inhA | 1674628 | p.Ser143Gly | missense_variant | 0.94 | isoniazid | |
ethionamide | ||||||
inhA | 1674651 | c.450C>T | synonymous_variant | 0.94 | isoniazid | |
ethionamide | ||||||
inhA | 1674656 | p.Ser152Thr | missense_variant | 0.94 | isoniazid | |
ethionamide | ||||||
inhA | 1674687 | c.486G>C | synonymous_variant | 0.93 | isoniazid | |
ethionamide | ||||||
inhA | 1674699 | c.498C>T | synonymous_variant | 0.91 | isoniazid | |
ethionamide | ||||||
inhA | 1674703 | c.502T>C | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674708 | c.507G>A | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674718 | c.517_519delAGGinsCGC | synonymous_variant | 0.87 | isoniazid | |
ethionamide | ||||||
inhA | 1674726 | c.525G>C | synonymous_variant | 0.87 | isoniazid | |
ethionamide | ||||||
inhA | 1674729 | c.528G>A | synonymous_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674732 | c.531C>G | synonymous_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674738 | c.537C>G | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674745 | p.Tyr182Val | missense_variant | 0.89 | isoniazid | |
ethionamide | ||||||
inhA | 1674756 | c.555T>C | synonymous_variant | 0.89 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
inhA | 1674759 | c.558G>C | synonymous_variant | 0.89 | isoniazid | |
ethionamide | ||||||
inhA | 1674765 | c.564C>G | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674774 | c.573A>C | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674777 | c.576C>A | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674780 | c.579T>G | synonymous_variant | 0.89 | isoniazid | |
ethionamide | ||||||
inhA | 1674789 | c.588G>C | synonymous_variant | 0.89 | isoniazid | |
ethionamide | ||||||
inhA | 1674801 | c.600T>C | synonymous_variant | 0.93 | isoniazid | |
ethionamide | ||||||
inhA | 1674813 | c.612C>G | synonymous_variant | 0.92 | isoniazid | |
ethionamide | ||||||
inhA | 1674816 | c.615T>C | synonymous_variant | 0.92 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
inhA | 1674837 | c.636C>T | synonymous_variant | 0.9 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
inhA | 1674840 | c.639C>G | synonymous_variant | 0.9 | isoniazid | |
ethionamide | ||||||
inhA | 1674846 | p.Ile215Met | missense_variant | 0.91 | isoniazid | |
ethionamide | ||||||
inhA | 1674883 | p.Ile228Leu | missense_variant | 0.89 | isoniazid | |
ethionamide | ||||||
inhA | 1674888 | c.687C>A | synonymous_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674903 | c.702T>C | synonymous_variant | 0.87 | isoniazid | |
ethionamide | ||||||
inhA | 1674904 | p.Ala235Pro | missense_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674909 | c.708G>C | synonymous_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674924 | c.723G>C | synonymous_variant | 0.88 | isoniazid | |
ethionamide | ||||||
inhA | 1674942 | c.741T>G | synonymous_variant | 0.81 | isoniazid | |
ethionamide | ||||||
inhA | 1674957 | c.756G>C | synonymous_variant | 0.72 | isoniazid | |
ethionamide | ||||||
inhA | 1674963 | c.762G>C | synonymous_variant | 0.63 | isoniazid | |
ethionamide | ||||||
inhA | 1674966 | c.765T>C | synonymous_variant | 0.61 | isoniazid | |
ethionamide | ||||||
inhA | 1674967 | p.Asp256Thr | missense_variant | 0.58 | isoniazid | |
ethionamide | ||||||
inhA | 1674970 | p.Ile257Val | missense_variant | 0.56 | isoniazid | |
ethionamide | ||||||
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.78 | pyrazinamide | |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.8 | pyrazinamide | |
rpsA | 1833904 | c.363G>A | synonymous_variant | 0.89 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.96 | pyrazinamide | |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.97 | pyrazinamide | |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.97 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.97 | pyrazinamide | |
rpsA | 1833995 | c.454C>T | synonymous_variant | 0.98 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.98 | pyrazinamide | |
rpsA | 1834009 | c.468C>G | synonymous_variant | 0.98 | pyrazinamide | |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.98 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.98 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.98 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.97 | pyrazinamide | |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.97 | pyrazinamide | |
rpsA | 1834096 | c.555G>C | synonymous_variant | 0.94 | pyrazinamide | |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.93 | pyrazinamide | |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.95 | pyrazinamide | |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R - Interim |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
ndh | 2102098 | c.945G>C | synonymous_variant | 0.26 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102103 | p.Tyr314His | missense_variant | 0.26 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102104 | c.939G>T | synonymous_variant | 0.25 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102113 | c.930C>G | synonymous_variant | 0.26 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102124 | p.Pro307Ser | missense_variant | 0.24 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102131 | p.Gln304Lys | missense_variant | 0.25 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102146 | c.897G>C | synonymous_variant | 0.32 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102152 | c.891C>G | synonymous_variant | 0.27 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102155 | c.888G>A | synonymous_variant | 0.27 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102158 | c.885T>C | synonymous_variant | 0.28 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102161 | p.Arg294Gly | missense_variant | 0.28 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102164 | c.879A>C | synonymous_variant | 0.28 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102167 | c.876A>G | synonymous_variant | 0.3 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102176 | c.867T>C | synonymous_variant | 0.31 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102182 | c.859_861delAGGinsCGC | synonymous_variant | 0.3 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102188 | c.853_855delTTGinsCTC | synonymous_variant | 0.32 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102192 | p.Arg284Pro | missense_variant | 0.32 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102194 | c.849T>C | synonymous_variant | 0.32 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102203 | c.840T>G | synonymous_variant | 0.33 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102230 | p.Ser271Ala | missense_variant | 0.33 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 | isoniazid | Not assoc w R |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 | pyrazinamide | Not assoc w R |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.55 | isoniazid | |
kasA | 2517959 | c.-156C>T | upstream_gene_variant | 0.42 | isoniazid | |
kasA | 2518624 | c.510C>G | synonymous_variant | 0.42 | isoniazid | |
kasA | 2518627 | c.513T>C | synonymous_variant | 0.42 | isoniazid | |
kasA | 2518636 | c.522C>G | synonymous_variant | 0.43 | isoniazid | |
kasA | 2518642 | c.528A>G | synonymous_variant | 0.42 | isoniazid | |
kasA | 2518645 | c.531G>C | synonymous_variant | 0.4 | isoniazid | |
kasA | 2518657 | c.543G>A | synonymous_variant | 0.4 | isoniazid | |
kasA | 2518663 | c.549T>C | synonymous_variant | 0.36 | isoniazid | |
kasA | 2518672 | c.558G>C | synonymous_variant | 0.29 | isoniazid | |
kasA | 2518688 | p.Val192Phe | missense_variant | 0.49 | isoniazid | |
kasA | 2518708 | c.594C>G | synonymous_variant | 0.53 | isoniazid | |
kasA | 2518711 | c.597A>G | synonymous_variant | 0.52 | isoniazid | |
kasA | 2518714 | c.600A>C | synonymous_variant | 0.54 | isoniazid | |
kasA | 2518715 | p.Pro201Gly | missense_variant | 0.52 | isoniazid | |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.67 | isoniazid | |
kasA | 2518756 | c.642G>C | synonymous_variant | 0.69 | isoniazid | |
kasA | 2518768 | c.654C>G | synonymous_variant | 0.68 | isoniazid | |
kasA | 2518780 | p.Glu222Asp | missense_variant | 0.68 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.67 | isoniazid | |
kasA | 2518785 | p.Glu224Ala | missense_variant | 0.67 | isoniazid | |
kasA | 2518787 | p.Arg225Gly | missense_variant | 0.66 | isoniazid | |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.67 | isoniazid | |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.69 | isoniazid | |
kasA | 2518798 | c.684G>C | synonymous_variant | 0.71 | isoniazid | |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.68 | isoniazid | |
kasA | 2518834 | c.720C>T | synonymous_variant | 0.63 | isoniazid | |
kasA | 2518843 | c.729T>C | synonymous_variant | 0.6 | isoniazid | |
kasA | 2518845 | p.Ala244Val | missense_variant | 0.6 | isoniazid | |
kasA | 2518847 | p.Leu245Met | missense_variant | 0.6 | isoniazid | |
kasA | 2518853 | p.Leu247Ile | missense_variant | 0.59 | isoniazid | |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.62 | isoniazid | |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.56 | isoniazid | |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.54 | isoniazid | |
kasA | 2518898 | c.784T>C | synonymous_variant | 0.41 | isoniazid | |
kasA | 2519203 | c.1089C>T | synonymous_variant | 0.72 | isoniazid | |
kasA | 2519224 | c.1110C>G | synonymous_variant | 0.7 | isoniazid | |
kasA | 2519239 | c.1125A>C | synonymous_variant | 0.52 | isoniazid | |
kasA | 2519242 | c.1128C>G | synonymous_variant | 0.48 | isoniazid | |
kasA | 2519245 | c.1131T>C | synonymous_variant | 0.46 | isoniazid | |
kasA | 2519257 | c.1143C>T | synonymous_variant | 0.43 | isoniazid | |
kasA | 2519260 | c.1146T>C | synonymous_variant | 0.47 | isoniazid | |
kasA | 2519263 | c.1149C>T | synonymous_variant | 0.43 | isoniazid | |
kasA | 2519269 | c.1155C>T | synonymous_variant | 0.43 | isoniazid | |
kasA | 2519272 | c.1158C>G | synonymous_variant | 0.41 | isoniazid | |
kasA | 2519278 | c.1164A>G | synonymous_variant | 0.39 | isoniazid | |
kasA | 2519281 | c.1167G>A | synonymous_variant | 0.37 | isoniazid | |
kasA | 2519284 | c.1170C>G | synonymous_variant | 0.35 | isoniazid | |
kasA | 2519293 | c.1179T>C | synonymous_variant | 0.34 | isoniazid | |
kasA | 2519298 | p.Arg395Gln | missense_variant | 0.34 | isoniazid | |
kasA | 2519305 | c.1191A>C | synonymous_variant | 0.33 | isoniazid | |
kasA | 2519306 | p.Val398Ile | missense_variant | 0.33 | isoniazid | |
kasA | 2519332 | c.1218C>T | synonymous_variant | 0.29 | isoniazid | |
thyA | 3073839 | c.633T>C | synonymous_variant | 0.52 | para-aminosalicylic_acid | |
thyA | 3073860 | c.612C>G | synonymous_variant | 0.66 | para-aminosalicylic_acid | |
thyA | 3073863 | c.609T>A | synonymous_variant | 0.66 | para-aminosalicylic_acid | |
thyA | 3073881 | c.591C>G | synonymous_variant | 0.66 | para-aminosalicylic_acid | |
thyA | 3073884 | c.588C>G | synonymous_variant | 0.69 | para-aminosalicylic_acid | |
thyA | 3073887 | p.Ser195Thr | missense_variant | 0.7 | para-aminosalicylic_acid | |
thyA | 3073892 | c.580T>C | synonymous_variant | 0.7 | para-aminosalicylic_acid | |
thyA | 3073893 | c.579C>T | synonymous_variant | 0.72 | para-aminosalicylic_acid | |
thyA | 3073902 | c.570C>A | synonymous_variant | 0.82 | para-aminosalicylic_acid | |
thyA | 3073929 | c.543T>C | synonymous_variant | 0.78 | para-aminosalicylic_acid | |
thyA | 3073950 | c.522G>A | synonymous_variant | 0.78 | para-aminosalicylic_acid | |
thyA | 3073953 | c.519T>G | synonymous_variant | 0.78 | para-aminosalicylic_acid | |
thyA | 3073956 | c.516G>C | synonymous_variant | 0.77 | para-aminosalicylic_acid | |
thyA | 3073959 | c.513T>C | synonymous_variant | 0.76 | para-aminosalicylic_acid | |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.75 | para-aminosalicylic_acid | |
thyA | 3073983 | c.489C>G | synonymous_variant | 0.71 | para-aminosalicylic_acid | |
thyA | 3073992 | c.478_480delAGCinsTCG | synonymous_variant | 0.51 | para-aminosalicylic_acid | |
thyA | 3073997 | c.475C>T | synonymous_variant | 0.5 | para-aminosalicylic_acid | |
thyA | 3074000 | c.472C>A | synonymous_variant | 0.5 | para-aminosalicylic_acid | |
thyA | 3074004 | p.Asp156Gly | missense_variant | 0.5 | para-aminosalicylic_acid | |
thyA | 3074007 | c.465C>G | synonymous_variant | 0.51 | para-aminosalicylic_acid | |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.45 | para-aminosalicylic_acid | |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.41 | para-aminosalicylic_acid | |
thyA | 3074046 | c.426G>C | synonymous_variant | 0.29 | para-aminosalicylic_acid | |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
whiB7 | 3568555 | p.Leu42Pro | missense_variant | 0.92 | kanamycin | Uncertain significance |
amikacin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
whiB7 | 3568854 | c.-176delG | upstream_gene_variant | 1.0 | kanamycin | Uncertain significance |
amikacin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
whiB7 | 3569220 | c.-541C>T | upstream_gene_variant | 0.89 | kanamycin | |
amikacin | ||||||
streptomycin | ||||||
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.94 | pyrazinamide | Not assoc w R - Interim |
mtrB | 3625065 | p.Met517Leu | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
mtrB | 3626562 | p.Pro18Ser | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
mtrA | 3626846 | c.504G>A | synonymous_variant | 0.94 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626852 | c.-239G>A | upstream_gene_variant | 0.94 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626857 | c.-244T>C | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626858 | c.-245A>G | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626861 | c.-248C>G | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626866 | c.-253T>C | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626870 | c.480C>T | synonymous_variant | 0.93 | rifampicin | Not assoc w R - Interim |
bedaquiline | Not assoc w R - Interim | |||||
mtrB | 3626876 | c.-263A>G | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626885 | c.-272A>G | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626890 | c.-277T>C | upstream_gene_variant | 0.93 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626903 | c.-290T>G | upstream_gene_variant | 0.94 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626912 | c.438T>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626915 | c.-302C>G | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626930 | c.-317A>G | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626939 | p.Glu137Asp | missense_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626942 | c.-329A>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626972 | c.-359A>G | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626978 | p.Asp124Glu | missense_variant | 0.96 | rifampicin | Uncertain significance |
bedaquiline | ||||||
mtrB | 3626996 | c.-383G>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627005 | c.-392G>A | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627008 | c.-395G>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627011 | c.-398T>G | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627016 | c.-403C>T | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627020 | c.330G>A | synonymous_variant | 0.96 | rifampicin | Not assoc w R - Interim |
bedaquiline | Not assoc w R - Interim | |||||
mtrA | 3627041 | p.Ile103Val | missense_variant | 0.97 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627068 | c.-455T>A | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627071 | c.-458G>C | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627080 | c.270T>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.96 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627119 | c.231T>G | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627139 | c.-526T>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627146 | c.204C>T | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627149 | c.-536G>C | upstream_gene_variant | 0.95 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627167 | c.-554T>C | upstream_gene_variant | 0.94 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627181 | c.-568T>C | upstream_gene_variant | 0.92 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627187 | c.163T>C | synonymous_variant | 0.91 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627188 | c.-577_-575delTTAinsCTG | upstream_gene_variant | 0.91 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627203 | c.-590C>G | upstream_gene_variant | 0.9 | rifampicin | |
bedaquiline | ||||||
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.93 | rifampicin | Not assoc w R - Interim |
rpoA | 3877662 | c.846C>T | synonymous_variant | 0.94 | rifampicin | |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.95 | rifampicin | |
rpoA | 3877677 | c.831G>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoA | 3877680 | c.828G>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoA | 3877689 | c.819C>T | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.96 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>T | synonymous_variant | 0.97 | rifampicin | Not assoc w R - Interim |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.98 | rifampicin | |
rpoA | 3877749 | c.759C>T | synonymous_variant | 0.98 | rifampicin | Not assoc w R - Interim |
rpoA | 3877758 | c.750G>C | synonymous_variant | 0.98 | rifampicin | |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.98 | rifampicin | Not assoc w R - Interim |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.97 | rifampicin | Not assoc w R - Interim |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.97 | rifampicin | Not assoc w R - Interim |
rpoA | 3877788 | c.720G>A | synonymous_variant | 0.98 | rifampicin | |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.92 | rifampicin | Not assoc w R - Interim |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.85 | rifampicin | Not assoc w R - Interim |
rpoA | 3877875 | c.633T>C | synonymous_variant | 0.82 | rifampicin | Not assoc w R - Interim |
rpoA | 3877881 | c.627G>C | synonymous_variant | 0.8 | rifampicin | |
rpoA | 3877893 | c.615C>G | synonymous_variant | 0.76 | rifampicin | |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
rpoA | 3877908 | c.600T>C | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
rpoA | 3877923 | c.585C>T | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.74 | rifampicin | |
rpoA | 3877950 | c.558C>G | synonymous_variant | 0.71 | rifampicin | |
rpoA | 3877962 | c.546G>C | synonymous_variant | 0.66 | rifampicin | |
rpoA | 3877971 | p.Asp179Glu | missense_variant | 0.63 | rifampicin | Uncertain significance |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.53 | rifampicin | |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoA | 3877992 | c.516C>G | synonymous_variant | 0.5 | rifampicin | |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoA | 3878019 | c.489A>G | synonymous_variant | 0.22 | rifampicin | |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
rpoA | 3878202 | c.306G>C | synonymous_variant | 0.79 | rifampicin | |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.81 | rifampicin | Not assoc w R - Interim |
rpoA | 3878229 | c.279C>G | synonymous_variant | 0.82 | rifampicin | |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.83 | rifampicin | |
rpoA | 3878250 | c.258C>G | synonymous_variant | 0.83 | rifampicin | |
rpoA | 3878253 | c.255G>C | synonymous_variant | 0.83 | rifampicin | |
rpoA | 3878256 | c.252G>C | synonymous_variant | 0.83 | rifampicin | |
rpoA | 3878262 | p.Ser82Gly | missense_variant | 0.82 | rifampicin | |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.86 | rifampicin | Not assoc w R - Interim |
rpoA | 3878274 | c.234G>C | synonymous_variant | 0.87 | rifampicin | |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.89 | rifampicin | Uncertain significance |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.9 | rifampicin | Not assoc w R - Interim |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.9 | rifampicin | Not assoc w R - Interim |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.89 | rifampicin | Not assoc w R - Interim |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.9 | rifampicin | |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.92 | rifampicin | Not assoc w R - Interim |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.92 | rifampicin | Not assoc w R - Interim |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.92 | rifampicin | Not assoc w R - Interim |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.92 | rifampicin | Not assoc w R - Interim |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.92 | rifampicin | |
rpoA | 3878358 | c.150C>G | synonymous_variant | 0.91 | rifampicin | |
rpoA | 3878364 | c.144A>C | synonymous_variant | 0.91 | rifampicin | |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.93 | rifampicin | |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.92 | rifampicin | |
rpoA | 3878421 | c.87A>T | synonymous_variant | 0.9 | rifampicin | |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.9 | rifampicin | |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.85 | rifampicin | |
rpoA | 3878454 | c.54A>C | synonymous_variant | 0.79 | rifampicin | |
rpoA | 3878457 | p.Asn17Asp | missense_variant | 0.74 | rifampicin | |
rpoA | 3878460 | p.Asp16Glu | missense_variant | 0.74 | rifampicin | |
rpoA | 3878465 | p.Thr15Ala | missense_variant | 0.73 | rifampicin | |
rpoA | 3878468 | p.Leu14Ile | missense_variant | 0.73 | rifampicin | |
rpoA | 3878472 | p.Asp12Glu | missense_variant | 0.74 | rifampicin | |
rpoA | 3878475 | c.33G>A | synonymous_variant | 0.74 | rifampicin | |
rpoA | 3878479 | c.28_29delTCinsAG | synonymous_variant | 0.74 | rifampicin | |
rpoA | 3878496 | c.12A>T | synonymous_variant | 0.75 | rifampicin | |
rpoA | 3878499 | c.9C>T | synonymous_variant | 0.76 | rifampicin | |
rpoA | 3878683 | c.-176G>C | upstream_gene_variant | 0.6 | rifampicin | |
rpoA | 3878698 | c.-191A>G | upstream_gene_variant | 0.57 | rifampicin | |
rpoA | 3878701 | c.-194C>G | upstream_gene_variant | 0.57 | rifampicin | |
rpoA | 3878704 | c.-197C>T | upstream_gene_variant | 0.57 | rifampicin | |
rpoA | 3878725 | c.-220_-218delCTAinsTTG | upstream_gene_variant | 0.57 | rifampicin | |
rpoA | 3878731 | c.-224C>T | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3878742 | c.-235G>A | upstream_gene_variant | 0.58 | rifampicin | |
rpoA | 3878746 | c.-239A>G | upstream_gene_variant | 0.58 | rifampicin | Uncertain significance |
rpoA | 3878749 | c.-242G>T | upstream_gene_variant | 0.55 | rifampicin | |
rpoA | 3878755 | c.-248G>C | upstream_gene_variant | 0.52 | rifampicin | |
rpoA | 3878758 | c.-251G>C | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3878764 | c.-257A>G | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3878769 | c.-262C>A | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3878773 | c.-268_-266delAGCinsTCG | upstream_gene_variant | 0.52 | rifampicin | |
rpoA | 3878785 | c.-278T>C | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3878788 | c.-281G>C | upstream_gene_variant | 0.58 | rifampicin | Uncertain significance |
rpoA | 3878794 | c.-287G>C | upstream_gene_variant | 0.53 | rifampicin | Uncertain significance |
rpoA | 3878797 | c.-290G>C | upstream_gene_variant | 0.52 | rifampicin | |
rpoA | 3878803 | c.-296G>C | upstream_gene_variant | 0.52 | rifampicin | Uncertain significance |
rpoA | 3878809 | c.-302T>C | upstream_gene_variant | 0.52 | rifampicin | |
rpoA | 3878823 | c.-316G>C | upstream_gene_variant | 0.46 | rifampicin | |
rpoA | 3878830 | c.-325_-323delCTGinsATC | upstream_gene_variant | 0.21 | rifampicin | |
rpoA | 3878844 | c.-337C>A | upstream_gene_variant | 0.19 | rifampicin | |
rpoA | 3879073 | c.-566A>G | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879079 | c.-572A>G | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3879088 | c.-581A>C | upstream_gene_variant | 0.54 | rifampicin | |
rpoA | 3879094 | c.-587T>C | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879121 | c.-616_-614delCTTinsACC | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879124 | c.-618_-617delTGinsGC | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879127 | c.-620T>C | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879130 | c.-623A>G | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879136 | c.-629A>G | upstream_gene_variant | 0.52 | rifampicin | |
rpoA | 3879160 | c.-653A>G | upstream_gene_variant | 0.51 | rifampicin | |
rpoA | 3879178 | c.-671T>C | upstream_gene_variant | 0.53 | rifampicin | |
rpoA | 3879190 | c.-685_-683delGCCinsTCG | upstream_gene_variant | 0.47 | rifampicin | |
rpoA | 3879196 | c.-689C>T | upstream_gene_variant | 0.46 | rifampicin | |
rpoA | 3879199 | c.-692C>T | upstream_gene_variant | 0.46 | rifampicin | |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.39 | pyrazinamide | |
clpC1 | 4038647 | c.2058T>A | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038658 | p.Lys683Gln | missense_variant | 0.34 | pyrazinamide | |
clpC1 | 4038662 | c.2043T>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4038671 | c.2034T>G | synonymous_variant | 0.41 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038679 | p.Pro676Ala | missense_variant | 0.41 | pyrazinamide | |
clpC1 | 4038683 | c.2020_2022delTCTinsAGC | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.44 | pyrazinamide | |
clpC1 | 4038707 | c.1998C>G | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038721 | c.1984C>T | synonymous_variant | 0.71 | pyrazinamide | |
clpC1 | 4038725 | c.1980C>G | synonymous_variant | 0.71 | pyrazinamide | |
clpC1 | 4038740 | c.1965G>C | synonymous_variant | 0.75 | pyrazinamide | |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.76 | pyrazinamide | |
clpC1 | 4038764 | c.1941C>G | synonymous_variant | 0.78 | pyrazinamide | |
clpC1 | 4038767 | c.1938G>C | synonymous_variant | 0.76 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.75 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.78 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.76 | pyrazinamide | |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.74 | pyrazinamide | |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.73 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.26 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039082 | c.1623C>T | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039091 | c.1614G>C | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4039097 | c.1608G>T | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039124 | c.1581C>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039532 | c.1173C>T | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039574 | p.Ala377Ser | missense_variant | 0.41 | pyrazinamide | |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.41 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039592 | c.1113G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039601 | c.1104G>A | synonymous_variant | 0.47 | pyrazinamide | |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.53 | pyrazinamide | |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.47 | pyrazinamide | |
clpC1 | 4039628 | c.1077C>G | synonymous_variant | 0.47 | pyrazinamide | |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039670 | c.1035G>C | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4039682 | c.1023C>T | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039832 | c.873C>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.91 | pyrazinamide | |
clpC1 | 4039856 | c.849C>T | synonymous_variant | 0.94 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.94 | pyrazinamide | |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.96 | pyrazinamide | |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.97 | pyrazinamide | |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.96 | pyrazinamide | |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.95 | pyrazinamide | |
clpC1 | 4039946 | c.759A>G | synonymous_variant | 0.95 | pyrazinamide | |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.95 | pyrazinamide | |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.94 | pyrazinamide | |
clpC1 | 4039955 | c.750G>C | synonymous_variant | 0.94 | pyrazinamide | |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.94 | pyrazinamide | |
clpC1 | 4040001 | p.His235Ala | missense_variant | 0.86 | pyrazinamide | |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.86 | pyrazinamide | |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.84 | pyrazinamide | |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.84 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.81 | pyrazinamide | |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 | ethambutol | Not assoc w R |
ethA | 4326676 | p.Ser266Arg | missense_variant | 0.91 | ethionamide | Uncertain significance |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 | streptomycin | Not assoc w R |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.89 | streptomycin | Not assoc w R |
gid | 4408417 | c.-215G>T | upstream_gene_variant | 1.0 | streptomycin |