Rv3854c - c.449_481delGATTCGCCGGCTCGGAGGATTTCGTCGGGCCGA
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
0 MDR-TB
85 Pre-XDR-TB
5 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 90 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR4798991 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR7162976 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR7162976 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR22175221 | XDR-TB | lineage2.2.1 | None |
| SRR22175221 | XDR-TB | lineage2.2.1 | None |
| ERR4797582 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799715 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796438 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827545 | XDR-TB | lineage2.2.1 | None |
| ERR4797660 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4797955 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None |
| ERR4797783 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796959 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799044 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796427 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4799192 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827546 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4799957 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR28351256 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28351256 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28351254 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28351254 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28351571 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28351571 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29772637 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29772637 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4798499 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4797485 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827515 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4797304 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800071 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800574 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800578 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827355 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None |
| ERR4797303 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4798733 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796264 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4796264 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR25827476 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4796892 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4797740 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800555 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799515 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800300 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800300 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796789 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796789 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR13260947 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13260947 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13261253 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13261253 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13261972 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13261972 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13266660 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13266660 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR15014685 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR15014685 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4796897 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4798079 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800063 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR28351584 | HR-TB | lineage2.2.1 | None |
| SRR28351584 | HR-TB | lineage2.2.1 | None |
| ERR4796945 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796851 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4798785 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR28045456 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4796471 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799351 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800475 | XDR-TB | lineage2.2.1 | in |
| ERR4799453 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4798073 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799899 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827664 | XDR-TB | lineage2.2.1 | None |
| ERR4797876 | Pre-XDR-TB | lineage2.2.1 | in |
| SRR25827815 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR25827388 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4799517 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799517 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796738 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4796738 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4797776 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4799298 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR4800426 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR13260951 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13260951 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13262104 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13262104 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13266818 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13266818 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13267036 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13267036 | Pre-XDR-TB | lineage2.2.1 | None |
