Rv3197A - c.242_245delGTCCinsATCCTT
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
6 Sensitive
0 RR-TB
6 HR-TB
0 MDR-TB
135 Pre-XDR-TB
6 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 8 |
| lineage2.2.1 | 132 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1;lineage4 | 3 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1;lineage3 | 3 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.3 | 1 |
| lineage1.1.2;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 154 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28044953 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13266704 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266673 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800583 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR15600386 | Pre-XDR-TB | lineage4.8 | None | ERR4797152 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827710 | XDR-TB | lineage2.2.1 | None | SRR25827291 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351487 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827569 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639740 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827793 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266117 | HR-TB | lineage2.2.1 | None | ERR13261202 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266422 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261227 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266734 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267047 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266103 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082635 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266914 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267056 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261377 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284162 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266920 | XDR-TB | lineage2.2.1 | None | SRR22175252 | HR-TB | lineage2.2.1 | None | ERR13261261 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266730 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800612 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796682 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796785 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796575 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798115 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4797295 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797682 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797759 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797119 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797180 | XDR-TB | lineage2.2.1 | in | ERR4799271 | Pre-XDR-TB | lineage2.2.1 | in | SRR21277700 | Sensitive | lineage4.5 | None | ERR4799510 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266104 | HR-TB | lineage2.2.1 | None | ERR4799792 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799823 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799824 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800028 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800062 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798561 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827390 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4798840 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797946 | Pre-XDR-TB | lineage2.2.1 | in | ERR5866396 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799329 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266534 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045585 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045947 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175259 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046240 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261370 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266152 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262013 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045389 | Pre-XDR-TB | lineage2.2.1 | None | SRR16057987 | Sensitive | lineage2.2.1.1 | None | SRR25827882 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796665 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797680 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799028 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799098 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799456 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800608 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267088 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | ERR13290871 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR13266707 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266402 | Pre-XDR-TB | lineage2.2.1 | None | DRR473879 | Other | lineage2.2.1 | None | ERR13266121 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261219 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266741 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424925 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266532 | XDR-TB | lineage2.2.1 | None | SRR29772786 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266960 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827607 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | ERR4797652 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798475 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175246 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798656 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798766 | Pre-XDR-TB | lineage2.2.1 | in | ERR5866394 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866395 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797787 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | in | ERR4800549 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798862 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799088 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799679 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799916 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4798052 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799406 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266740 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799751 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799480 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798669 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800573 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800593 | Pre-XDR-TB | lineage2.2.1 | in | SRR28044467 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4810560 | Sensitive | lineage2.2.1.1 | cn | SRR28351351 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351167 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351481 | Pre-XDR-TB | lineage2.2.1 | None | SRR6152676 | Sensitive | lineage2.2.1.1 | ca | SRR28045458 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827746 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516825 | Pre-XDR-TB | lineage2.2.1 | gb | SRR25827553 | Pre-XDR-TB | lineage2.2.1;lineage4.3 | None | ERR2517013 | Pre-XDR-TB | lineage2.2.1 | gb | ERR13261375 | Pre-XDR-TB | lineage2.2.1 | None | ERR9125591 | Sensitive | lineage2.2.1.1 | None | SRR28045817 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175185 | HR-TB | lineage2.2.1 | None | ERR13266570 | HR-TB | lineage1.1.2;lineage2.2.1 | None | ERR13266443 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267062 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267058 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772729 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827644 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR10225448 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266639 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266554 | HR-TB | lineage2.2.1 | None | ERR13260976 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266640 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827624 | XDR-TB | lineage2.2.1;lineage4 | None | ERR13266531 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797995 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797317 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797325 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799671 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797522 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798901 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800070 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797725 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799474 | Pre-XDR-TB | lineage2.2.1;lineage3 | in | ERR4796647 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800230 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800509 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351578 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28351170 | Pre-XDR-TB | lineage2.2.1 | None | SRR6152915 | Sensitive | lineage2.2.1.1 | ca | ERR4830992 | Pre-XDR-TB | lineage2.2.1 | np | ERR13266710 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799119 | Pre-XDR-TB | lineage2.2.1 | None |
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