Run ID: ERR6149876
Sample name:
Date: 02-04-2023 01:47:52
Number of reads: 3909742
Percentage reads mapped: 58.88
Strain: La1.8.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.2 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.48 | streptomycin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.26 |
mshA | 576482 | p.Val379Leu | missense_variant | 0.12 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
embR | 1416390 | c.958C>T | synonymous_variant | 1.0 |
atpE | 1461173 | c.129C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473281 | n.1436C>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473282 | n.1437C>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473288 | n.1443C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473296 | n.1451G>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473297 | n.1452G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476101 | n.2444C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.48 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102991 | p.Val18Met | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 0.98 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.16 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
folC | 2747631 | c.-33C>T | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.13 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.54 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 0.98 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.97 |
embC | 4242029 | p.Leu723Val | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 0.98 |
embA | 4244220 | c.988C>T | synonymous_variant | 0.98 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.25 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.2 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4268598 | c.238delG | frameshift_variant | 0.18 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
embR | 1416583 | c.-2382_764del | frameshift_variant&start_lost | 1.0 |