Run ID: SRR13861586
Sample name:
Date: 03-04-2023 09:35:31
Number of reads: 761632
Percentage reads mapped: 15.25
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.79 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9275 | c.1974G>A | synonymous_variant | 0.15 |
gyrA | 9278 | c.1977G>C | synonymous_variant | 0.15 |
gyrA | 9281 | c.1980C>G | synonymous_variant | 0.14 |
gyrA | 9284 | c.1983T>C | synonymous_variant | 0.14 |
gyrA | 9296 | c.1995T>C | synonymous_variant | 0.14 |
gyrA | 9304 | p.Gly668Glu | missense_variant | 0.15 |
gyrA | 9311 | c.2010C>T | synonymous_variant | 0.14 |
gyrA | 9323 | c.2022C>G | synonymous_variant | 0.14 |
gyrA | 9490 | p.Gly730Asp | missense_variant | 1.0 |
fgd1 | 491231 | p.Phe150Tyr | missense_variant | 0.93 |
rpoB | 762218 | c.2412T>G | synonymous_variant | 0.14 |
rpoC | 763780 | c.411C>G | synonymous_variant | 0.13 |
rpoC | 763783 | c.414G>C | synonymous_variant | 0.17 |
rpoC | 763801 | c.432C>G | synonymous_variant | 0.16 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.16 |
rpoC | 763819 | c.450G>C | synonymous_variant | 0.15 |
rpoC | 763831 | c.462A>G | synonymous_variant | 0.16 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.17 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.21 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.17 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.15 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.15 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.16 |
rpoC | 763891 | c.522G>C | synonymous_variant | 0.12 |
rpoC | 763945 | c.576T>C | synonymous_variant | 0.13 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.12 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.14 |
rpoC | 766128 | p.Ala920Gly | missense_variant | 1.0 |
rpsL | 781503 | c.-57T>C | upstream_gene_variant | 1.0 |
fbiC | 1303099 | c.170dupA | frameshift_variant | 1.0 |
fbiC | 1304043 | c.1116delC | frameshift_variant | 1.0 |
Rv1258c | 1406861 | p.Ile160Met | missense_variant | 1.0 |
Rv1258c | 1407463 | c.-123G>C | upstream_gene_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472101 | n.256G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472230 | n.385C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472303 | n.458G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473281 | n.1436C>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473282 | n.1437C>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473288 | n.1443C>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473296 | n.1451G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473297 | n.1452G>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473944 | n.287G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473945 | n.288T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474235 | n.578G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475139 | n.1482C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475369 | n.1712G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476263 | n.2606C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476576 | n.2919C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.15 |
kasA | 2518209 | p.Thr32Arg | missense_variant | 1.0 |
folC | 2746788 | p.Ala271Pro | missense_variant | 1.0 |
thyX | 3067214 | p.Ser244Arg | missense_variant | 0.96 |
fbiD | 3339396 | c.279C>T | synonymous_variant | 1.0 |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.13 |
rpoA | 3877678 | p.Ala277Arg | missense_variant | 0.13 |
rpoA | 3877680 | c.828G>C | synonymous_variant | 0.13 |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.13 |
rpoA | 3877704 | c.804G>T | synonymous_variant | 0.13 |
rpoA | 3878048 | p.Ala154Ser | missense_variant | 0.96 |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.12 |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.15 |
clpC1 | 4038434 | c.2271G>C | synonymous_variant | 0.13 |
clpC1 | 4038498 | p.Ser736Thr | missense_variant | 0.13 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.12 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.13 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.14 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.17 |
clpC1 | 4038932 | c.1773G>C | synonymous_variant | 0.18 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.14 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.14 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.14 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.13 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.13 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.14 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.14 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.13 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.14 |
clpC1 | 4040354 | c.351A>G | synonymous_variant | 0.13 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.13 |
clpC1 | 4040369 | c.336C>G | synonymous_variant | 0.14 |
clpC1 | 4040411 | c.294T>C | synonymous_variant | 0.14 |
embC | 4241050 | c.1188T>G | synonymous_variant | 0.12 |
embC | 4241104 | c.1242G>A | synonymous_variant | 0.14 |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.14 |
embB | 4247887 | c.1374C>T | synonymous_variant | 0.12 |
embB | 4247914 | c.1401G>C | synonymous_variant | 0.12 |
embB | 4248133 | c.1620C>G | synonymous_variant | 0.12 |
embB | 4248142 | c.1629T>C | synonymous_variant | 0.14 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.14 |
embB | 4248368 | p.Leu619Val | missense_variant | 0.95 |
ethA | 4327082 | p.Cys131Ser | missense_variant | 1.0 |
ethA | 4327097 | p.Leu126His | missense_variant | 1.0 |
gid | 4407792 | c.411G>C | synonymous_variant | 1.0 |