Rv1630 - c.318C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
3 RR-TB
17 HR-TB
13 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1.2.1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1 | 3 |
| M.canetti;lineage4.9 | 2 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage4.9 | 25 |
| 3 | |
| lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| lineage4.6.2.2 | 2 |
| La1.7;lineage4.9 | 8 |
| lineage2.2.2 | 1 |
| lineage4.3.3 | 2 |
| La1.7 | 2 |
| lineage3 | 3 |
| lineage4.9;lineage9 | 2 |
| lineage6.1.1 | 2 |
| La1.8.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.8.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.8 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | ERR13266555 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798823 | HR-TB | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4769493 | Other | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | ERR037504 | Other | lineage4.9.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4798504 | RR-TB | lineage3 | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1238558 | Other | lineage4.9 | None | SRR22251329 | Other | lineage2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR400529 | Other | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None |
|---|
