Rv3596c - c.339C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
40 Sensitive
1 RR-TB
17 HR-TB
4 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 51 |
| lineage3.1;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.3.3 | 1 |
| 3 | |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.8.1 | 1 |
| lineage4.3 | 1 |
| lineage2.2.1 | 5 |
| La1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 90 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819241 | Other | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR137286 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR6046245 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR1063896 | Sensitive | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1791747 | Other | La1.8.1 | None | SRR7069236 | Sensitive | lineage4.3 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR400345 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR176751 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None |
|---|
