EBG00000313339 - n.280C>T
Drug resistance types
34 Sensitive
30 RR-TB
45 HR-TB
76 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
81 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 113 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 16 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.2;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.2.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 16 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage2.2.1 | 16 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 2 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| La1.2.BCG | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2 | 2 |
| lineage4.5 | 3 |
| La3;M.canetti;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage3 | 4 |
| La1.8.1 | 2 |
| lineage4.6.4 | 2 |
| lineage4.3.2.1 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.4.1.1 | 3 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 4 |
| La1;lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| 3 | |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 269 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341308 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR1166821 | RR-TB | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR6045706 | Other | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6044815 | RR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR3275215 | RR-TB | lineage4.1.2.1 | nl | SRR1162864 | MDR-TB | lineage4.1.2.1 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR7240492 | MDR-TB | La1.7.1 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR1915487 | Other | La1.2.BCG | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR20970016 | Other | lineage2.2 | None | ERR369159 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR363449 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR5341330 | Other | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR363421 | Other | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR2446118 | RR-TB | lineage4.1.2.1 | nl | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR3797083 | RR-TB | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR926165 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3275220 | Other | lineage3 | nl | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1791696 | RR-TB | La1.8.1 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | ERR926159 | Sensitive | lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | ERR2446144 | Other | lineage3 | nl | SRR3675541 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR5341453 | Other | lineage4.9 | None | ERR8665994 | RR-TB | lineage4.9 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR363490 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR363447 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | ERR736834 | HR-TB | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR5341456 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR1063896 | HR-TB | None | SRR1640750 | RR-TB | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675507 | RR-TB | lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR369151 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR13861176 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926156 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR926160 | Other | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | ERR4811030 | Other | lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR6045503 | Other | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR971389 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR12708416 | Sensitive | None | ERR369162 | Other | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675482 | RR-TB | lineage4.9 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR13861381 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None |
|---|
