EBG00000313339 - n.280C>T
Drug resistance types
137 Sensitive
7 RR-TB
97 HR-TB
17 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 63 |
| 87 | |
| lineage1.2.1.2.1 | 1 |
| lineage3 | 6 |
| La1.8.1 | 2 |
| lineage2.2.2 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2.1 | 25 |
| lineage2.2 | 3 |
| lineage4.1.2.1 | 23 |
| lineage4.1 | 4 |
| lineage1.1.1 | 1 |
| lineage4 | 93 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1 | 2 |
| lineage4.8 | 5 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2.1 | 3 |
| lineage4.3.2.1 | 3 |
| lineage1.1.2 | 2 |
| lineage4.6.4 | 2 |
| lineage1.1 | 1 |
| lineage4.3.3 | 4 |
| lineage3.1 | 2 |
| lineage4.1.2 | 2 |
| La1.2 | 1 |
| lineage2.2.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 3 |
| lineage4.9.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 5 |
| lineage6.1.3 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 363 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861176 | Sensitive | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1640750 | HR-TB | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR1791696 | Other | La1.8.1 | None | SRR18911980 | Sensitive | lineage2.2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR19318145 | Sensitive | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR21658542 | Sensitive | lineage4.1.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | ERR1035239 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675477 | Other | lineage4.9 | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675222 | Other | None | ERR3275450 | Other | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675279 | Other | None | SRR3675501 | HR-TB | None | SRR3675247 | Other | lineage4.9 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR2229573 | Sensitive | lineage4.8 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818831 | Other | lineage3 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR3275220 | Other | lineage3 | nl | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341453 | Sensitive | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR2446382 | Other | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4 | None | SRR5535933 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR278594 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045952 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045158 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR4830353 | Other | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | ERR2517528 | Other | lineage3 | nl | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046802 | Other | lineage4 | None | SRR6325447 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4831638 | Sensitive | None | ERR3077978 | Other | lineage1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6785315 | Sensitive | lineage4.3.3 | None | ERR323036 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR7535082 | Sensitive | lineage4 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR502532 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131148 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323055 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR1063896 | Sensitive | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797036 | HR-TB | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR4188247 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4188350 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4799025 | Pre-XDR-TB | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798431 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811030 | Sensitive | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6197030 | Other | lineage4.9 | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736834 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866407 | Sensitive | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736848 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR752229 | Other | lineage4.5 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10808805 | Sensitive | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173777 | Other | lineage4 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837666 | Sensitive | lineage4.9 | None |
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