Rv3596c - c.154T>C
Drug resistance types
81 Sensitive
8 RR-TB
220 HR-TB
13 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
119 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 67 |
| lineage4;lineage3.1 | 1 |
| 237 | |
| lineage3 | 6 |
| lineage4.9 | 49 |
| La1 | 2 |
| lineage2 | 2 |
| La1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1 | 20 |
| lineage2.2 | 7 |
| lineage4.6.1.1 | 4 |
| lineage4.3.4 | 1 |
| lineage4.5 | 2 |
| lineage4.6.5 | 2 |
| lineage1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.2.1 | 7 |
| lineage6.3.1 | 1 |
| lineage6.1.1 | 2 |
| lineage6 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| La3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1.1 | 1 |
| lineage3.1 | 4 |
| lineage4.3.3 | 1 |
| lineage4.8 | 3 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.1 | 2 |
| lineage4.1.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1.3 | 1 |
| La1.8.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1 | 1 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 447 |
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR403298 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR4407463 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358837 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR736874 | HR-TB | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR7451301 | Sensitive | None | ERR7451300 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8976043 | HR-TB | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9119669 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786604 | Other | None | ERR9125480 | Sensitive | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787165 | Other | lineage6 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1167384 | Other | lineage4 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1169194 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175074 | MDR-TB | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR16058668 | Sensitive | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR13861304 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR17832802 | HR-TB | lineage3 | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR24061597 | Sensitive | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR22179528 | Sensitive | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR24061598 | Sensitive | None | SRR24061599 | Sensitive | None | SRR24061600 | Sensitive | None | SRR8692782 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692898 | Other | lineage4.9 | None | ERR176778 | HR-TB | None | SRR8692887 | Other | None | ERR176751 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | ERR176779 | HR-TB | None | ERR4814331 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4815361 | Sensitive | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | ERR4815471 | Other | lineage4.9 | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675501 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675502 | Other | None | ERR4816999 | Other | None | ERR4816019 | Sensitive | None | ERR2027263 | Other | lineage4 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4817181 | Sensitive | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818929 | HR-TB | None | ERR234659 | HR-TB | None | ERR4818561 | HR-TB | lineage4 | None | ERR4819051 | Other | lineage4 | None | SRR5007188 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4818615 | Other | None | SRR5341418 | Other | None | ERR4819357 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR4819927 | Sensitive | None | ERR4819933 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341330 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR5341456 | Other | None | ERR2693231 | Other | None | ERR4821046 | Sensitive | None | ERR2693239 | HR-TB | None | ERR2652925 | HR-TB | lineage4.9 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR5818567 | Sensitive | dj | SRR6045706 | Sensitive | lineage4 | None | SRR5818652 | Sensitive | dj | SRR5818605 | Sensitive | None | SRR5818614 | Sensitive | dj | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR5818653 | Sensitive | dj | SRR5818676 | Sensitive | dj | SRR5818668 | Sensitive | dj | SRR5818661 | Sensitive | dj | SRR6044780 | Other | lineage4.9 | None | SRR5818685 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046482 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | ERR323036 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831117 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | SRR6896147 | Sensitive | lineage4.8 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323038 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR1063858 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283024 | Other | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR3597003 | Sensitive | None | ERR3597005 | Sensitive | None | ERR3597001 | Sensitive | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR3597002 | Sensitive | None | ERR3597006 | Sensitive | None | ERR363445 | Sensitive | lineage4 | None | ERR3597007 | Sensitive | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR387051 | HR-TB | None |
|---|
