EBG00000313339 - n.637_651delCCTCTCCGGAGGAGG
Drug resistance types
1 Sensitive
4 RR-TB
5 HR-TB
7 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 18 |
| lineage4.9 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.7 | 1 |
| lineage4.4.2 | 1 |
| lineage4.8 | 2 |
| lineage3 | 2 |
| lineage4 | 1 |
| lineage4.2.1 | 3 |
| lineage4.3.4.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 51 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1238558 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR2027220 | Sensitive | lineage3.1.3 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818831 | Other | lineage3 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None |
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