EBG00000313339 - n.637_651delCCTCTCCGGAGGAGG
Drug resistance types
0 Sensitive
10 RR-TB
6 HR-TB
9 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
60 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 22 |
| lineage4 | 3 |
| lineage2.2.1.1 | 1 |
| lineage4.8 | 4 |
| lineage3.1.3 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.9 | 8 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage3 | 7 |
| lineage4.1.2.1 | 4 |
| 12 | |
| lineage4.1.1.3 | 1 |
| lineage3.1 | 1 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage4.4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.2.1 | 3 |
| lineage4.7 | 1 |
| lineage4.3.4.2 | 2 |
| La1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.4.2 | 2 |
| lineage4.5 | 1 |
| La1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21727760 | Other | lineage2.2.1 | None | ERR4816231 | Other | lineage4 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3675265 | Other | lineage4 | None | SRR3675513 | Other | lineage4.8 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818831 | Other | lineage3 | None | ERR4820290 | Other | lineage3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR2693231 | Other | None | ERR4820193 | Other | lineage3 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6046442 | Other | lineage3 | None | SRR6045778 | Other | lineage3.1 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR6046482 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046729 | Other | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755657 | Other | lineage4.8 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR4820586 | Other | lineage3 | gb | ERR3283024 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR3797044 | Other | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR3797061 | Other | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR16156751 | RR-TB | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | ERR6197036 | Other | lineage4 | None | ERR9117678 | Other | lineage4.6.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002902 | Other | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19304096 | Other | La1.2 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303899 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None |
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