Rv3596c - c.1221T>G
Drug resistance types
114 Sensitive
13 RR-TB
88 HR-TB
18 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| 61 | |
| lineage4.4.1.1 | 7 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 28 |
| lineage1.1.2 | 4 |
| La1.7.1 | 6 |
| lineage4.9 | 25 |
| lineage4.5 | 2 |
| La1.8.2 | 1 |
| La1.8.1 | 11 |
| La1.7 | 1 |
| lineage3 | 19 |
| lineage3.1.2.2 | 1 |
| lineage4.8.2 | 3 |
| lineage4.3.4.2.1 | 12 |
| lineage4.1.2.1 | 23 |
| lineage4.1.1 | 4 |
| lineage4.1.2 | 3 |
| lineage4.3.3 | 6 |
| lineage4.3.2 | 3 |
| lineage1.2.2.2 | 4 |
| lineage1.1.3.1 | 4 |
| lineage4.8 | 11 |
| lineage4.4.1.2 | 2 |
| lineage4.9.1 | 2 |
| lineage4.1 | 1 |
| lineage4.7 | 3 |
| lineage6.1.1 | 3 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4;lineage3.1.1 | 1 |
| lineage4.6.1.1 | 4 |
| lineage4.1.1.3 | 4 |
| lineage4.2.2.1 | 1 |
| lineage4.6.2.2 | 4 |
| lineage3.1.2.1 | 2 |
| La1.6 | 4 |
| lineage3.1.3 | 1 |
| lineage4;lineage3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage1.2.2 | 1 |
| lineage4.1.1.2 | 2 |
| lineage7 | 1 |
| La3 | 3 |
| lineage4.3.1.1 | 2 |
| lineage4 | 3 |
| lineage4.2.2.2 | 1 |
| lineage3.1.1 | 3 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.2 | 2 |
| lineage4.6.5 | 1 |
| lineage1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage3.1 | 2 |
| La2 | 2 |
| La1.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage2.2.2 | 2 |
| La1 | 2 |
| lineage4.3 | 1 |
| lineage4.3.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 316 |
Geographic prevalence
Country level data for this variant is available for 46 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172310 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR11972370 | MDR-TB | lineage2.2.1.1 | None | SRR1174897 | HR-TB | None | SRR1180270 | Other | lineage2.2.1 | None | SRR11871418 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972399 | MDR-TB | lineage2.2.1 | None | SRR11972458 | Sensitive | lineage1.1.2 | None | SRR13199738 | Other | La1.7.1 | None | SRR13837630 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837566 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861553 | Sensitive | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR15296920 | HR-TB | La1.7.1 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR15296919 | Other | La1.8.2 | None | SRR15296962 | Other | La1.7.1 | None | SRR1791792 | Other | La1.8.1 | None | SRR17077298 | Other | La1.7.1 | None | SRR17156530 | Other | La1.7 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1640750 | HR-TB | None | SRR1791870 | Other | La1.7.1 | None | SRR1791862 | Other | La1.8.1 | None | SRR1791985 | Other | La1.8.1 | None | SRR1792101 | Other | La1.7.1 | None | SRR18213901 | HR-TB | lineage3 | None | SRR1792315 | Other | La1.8.1 | None | SRR18213776 | Sensitive | lineage2.2.1 | None | SRR18213853 | Sensitive | lineage3.1.2.2 | None | SRR1792310 | Other | La1.8.1 | None | SRR18213974 | Sensitive | lineage4.8.2 | None | SRR18912993 | Sensitive | lineage4.9 | None | SRR2101447 | Sensitive | lineage4.3.4.2.1 | None | SRR2101435 | Sensitive | lineage4.1.2.1 | None | SRR2101482 | MDR-TB | lineage4.1.2.1 | None | SRR2101440 | RR-TB | lineage4.1.1 | None | SRR2101451 | Sensitive | lineage2.2.1 | None | SRR2101583 | Sensitive | lineage4.1.2.1 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101590 | Sensitive | lineage4.1.2 | None | SRR21675634 | Sensitive | lineage4.1.1 | None | SRR2101646 | Other | lineage2.2.1 | None | SRR2101683 | HR-TB | lineage4.1.2.1 | None | SRR21676941 | Sensitive | lineage4.3.3 | None | SRR21675708 | HR-TB | lineage4.1.2.1 | None | SRR21675855 | Sensitive | lineage4.1.2.1 | None | SRR21676316 | Sensitive | lineage4.3.2 | None | SRR21677071 | Sensitive | lineage1.2.2.2 | None | SRR6650303 | Other | lineage2.2.1 | None | SRR6650119 | Sensitive | lineage1.1.3.1 | None | SRR21710678 | Sensitive | lineage4.8 | None | SRR6207292 | MDR-TB | lineage4.1.2 | None | SRR6650117 | Sensitive | lineage4.4.1.2 | None | SRR6650428 | Sensitive | lineage1.2.2.2 | None | SRR6650368 | Sensitive | lineage1.2.2.2 | None | SRR6650285 | Sensitive | lineage4.8 | None | SRR6650365 | Sensitive | lineage2.2.1 | None | SRR6650185 | HR-TB | lineage1.1.3.1 | None | SRR6650302 | Sensitive | lineage3 | None | ERR4815766 | Sensitive | lineage4.8 | gb | SRR6650227 | Sensitive | lineage1.1.3.1 | None | SRR6650366 | Sensitive | lineage1.1.3.1 | None | ERR176762 | Sensitive | lineage4.9.1 | mw | SRR6650401 | Sensitive | lineage1.2.2.2 | None | ERR176771 | Sensitive | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR498286 | Sensitive | lineage4.1.2.1 | de | SRR3675482 | HR-TB | None | ERR4815376 | Sensitive | lineage4.7 | gb | SRR3085279 | Sensitive | lineage6.1.1 | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4815415 | Sensitive | lineage2.2.1 | gb | SRR3675486 | HR-TB | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR176475 | Sensitive | lineage4.3.4.2.1 | None | ERR164007 | Sensitive | lineage4.9.1 | mw | ERR181761 | Sensitive | lineage4.3.4.2.1 | None | ERR1750928 | Sensitive | lineage4.3.2.1 | za | ERR176495 | Sensitive | lineage4.3.4.2.1 | mw | ERR176738 | Sensitive | lineage4;lineage3.1.1 | mw | ERR176498 | Sensitive | lineage3 | mw | ERR176619 | Sensitive | lineage4.9 | None | ERR4814953 | Sensitive | lineage4.6.1.1 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | ERR4815031 | Sensitive | lineage3 | gb | SRR3675545 | HR-TB | None | ERR4815100 | Sensitive | lineage3 | gb | SRR3675502 | Other | None | ERR4816993 | Other | lineage4.3.4.2.1 | None | SRR3675533 | Sensitive | lineage3 | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR4817043 | Sensitive | lineage4.8.2 | gb | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816635 | Other | lineage4.1.1 | gb | ERR4817256 | Sensitive | lineage4.2.2.1 | gb | ERR1199055 | Sensitive | lineage4.6.1.1 | ug | ERR4817502 | Other | lineage4.4.1.1 | None | SRR4033402 | Sensitive | lineage2.2.1 | None | ERR2229489 | HR-TB | lineage4.8 | None | ERR4818060 | Sensitive | lineage4.6.2.2 | gb | ERR4818663 | Other | lineage3 | None | ERR4818743 | Other | lineage4.9 | None | ERR4816919 | Sensitive | lineage3.1.2.1 | None | ERR2513016 | Sensitive | lineage4.7 | None | ERR234127 | Sensitive | lineage2.2.1 | None | ERR4818774 | Other | lineage4.8 | None | ERR2512524 | Sensitive | lineage4.8 | None | SRR5073589 | HR-TB | lineage2.2.1.1 | None | SRR5065634 | Sensitive | lineage2.2.1 | vn | ERR2512495 | Other | La1.6 | gb | ERR2512523 | Sensitive | lineage3.1.2.1 | None | SRR4037677 | Sensitive | lineage4.4.1.1 | za | ERR4818310 | Sensitive | lineage4.4.1.2 | None | ERR2509681 | Sensitive | lineage2.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2503361 | Sensitive | lineage4.1.2.1 | None | ERR4818490 | Sensitive | lineage4.8 | None | ERR2512766 | Other | lineage3.1.3 | None | ERR2512753 | Sensitive | lineage4.7 | gb | ERR4818952 | Other | lineage3 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR2513569 | Sensitive | lineage3 | gb | SRR5067548 | Other | lineage1.1.1.1 | None | SRR5007180 | Other | None | ERR4818619 | Sensitive | lineage3 | None | ERR4820221 | Other | lineage4.8 | None | ERR2513877 | Sensitive | lineage3 | gb | SRR5341418 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR4819827 | Other | lineage1.2.2 | gb | ERR4819654 | Sensitive | lineage4.1.1.2 | gb | SRR5341218 | MDR-TB | lineage4.3.3 | None | ERR4819734 | RR-TB | lineage3 | gb | SRR5341259 | Other | lineage2.2.1 | None | ERR2514881 | HR-TB | lineage4.3.3 | None | ERR1199022 | Sensitive | lineage4.6.1.1 | ug | ERR498289 | Sensitive | lineage4.1.2.1 | de | ERR1023509 | Other | None | ERR4819935 | Sensitive | lineage4.9 | None | ERR4820896 | Sensitive | lineage4.1.2.1 | gb | ERR1200607 | HR-TB | lineage3 | et | ERR2693239 | HR-TB | None | SRR5341330 | HR-TB | None | ERR1200610 | Sensitive | lineage7 | et | SRR5341470 | HR-TB | None | ERR233352 | Sensitive | lineage4.1.2.1 | None | SRR6045425 | Sensitive | La3 | gb | ERR4821053 | Other | lineage3 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR5657424 | Other | La1.8.1 | None | SRR5657441 | Other | La1.8.1 | None | ERR4821362 | Sensitive | lineage2.2.1 | None | SRR20139566 | RR-TB | lineage4.1.2.1 | None | ERR4821240 | Sensitive | lineage3 | None | ERR4821675 | Sensitive | lineage4.9 | None | ERR4822169 | Other | lineage4.1.1.3 | gb | SRR6044916 | Other | lineage4.1.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045860 | Sensitive | lineage4.1.1.2 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045932 | MDR-TB | lineage4.2.2.2 | None | SRR6046000 | Sensitive | lineage3.1.1 | gb | SRR6044939 | Sensitive | La3 | gb | SRR6045952 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6045249 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR6045381 | Sensitive | lineage3.1.2 | None | SRR6325444 | HR-TB | None | SRR6046321 | Sensitive | lineage4.3.4.2.1 | gb | ERR278594 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6046362 | HR-TB | None | SRR6046384 | Other | lineage4.3.1.1 | gb | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325448 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046530 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046824 | HR-TB | None | SRR6046695 | Sensitive | La3 | gb | SRR6325447 | HR-TB | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046869 | Sensitive | lineage1.1.2 | gb | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077950 | MDR-TB | lineage3.1.1 | None | SRR6982467 | Other | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6982113 | Sensitive | lineage4.1.2.1 | None | SRR6896411 | MDR-TB | lineage4.1.2 | None | SRR6981920 | Sensitive | lineage4.3.4.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | SRR8065072 | Sensitive | La1.1 | None | ERR5311099 | HR-TB | None | ERR5165803 | Sensitive | lineage4.3.3 | None | ERR5311081 | HR-TB | None | SRR6982510 | Sensitive | lineage4;lineage2 | None | ERR323039 | HR-TB | None | SRR8073662 | Other | La1.8.1 | None | SRR8073675 | Other | La1.8.1 | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | DRR185075 | Sensitive | lineage2.2.1 | vn | ERR323063 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | DRR184908 | Sensitive | lineage2.2.2 | vn | ERR023761 | Sensitive | lineage4.3.2 | nl | ERR023749 | Sensitive | lineage3 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR046754 | Sensitive | lineage4.8.2 | gb | ERR067681 | HR-TB | None | ERR10430711 | Sensitive | La2 | None | ERR144568 | Pre-XDR-TB | None | ERR1063859 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3588243 | Sensitive | lineage4.3 | None | ERR3283021 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR4407530 | HR-TB | lineage4.1.2.1 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR405210 | Sensitive | lineage4.3.1 | None | ERR4407457 | Sensitive | lineage3.1.1 | None | ERR4407520 | Sensitive | lineage4.8 | None | ERR568778 | HR-TB | lineage4.6.2.2 | None | ERR4407543 | Sensitive | lineage2.2.1 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR6358837 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR775807 | Sensitive | lineage4.5 | None | ERR736865 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR775802 | MDR-TB | lineage1.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR779654 | Sensitive | lineage4.3.4.2.1 | None | ERR9117731 | HR-TB | lineage4.6.2.2 | None | ERR9117796 | Sensitive | lineage4.8 | None | ERR9117822 | Sensitive | lineage4.1.2.1 | None | ERR9117833 | Sensitive | lineage3 | None | ERR987722 | HR-TB | None | ERR9657179 | Other | lineage1.1.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10993940 | Other | La1.6 | None | SRR069989 | HR-TB | lineage2 | None | SRR10272574 | Sensitive | lineage4.4.1.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9892003 | Sensitive | lineage4.6.2.2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR10993953 | Other | La1.6 | None | SRR11462934 | Other | La1.8.1 | None | SRR10993948 | Other | La1.6 | None | SRR11294527 | HR-TB | La1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None |
|---|
