Rv3596c - c.1221T>G


Drug resistance types
73 Sensitive 12 RR-TB 87 HR-TB 17 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 74 Other
lineage Counts
lineage Count
lineage3.1.2 2
61
lineage2.2.1 24
lineage4.6.5 1
lineage4.1.2.1 20
lineage3.1.1 2
lineage4.1.2 3
lineage4.3.4.2.1 7
lineage1.1 1
lineage4.4.1.1 6
lineage4.2.1.1 1
lineage3.1 2
La2 2
lineage4.3.3 6
La1.8.1 11
lineage4;lineage2 1
La1.1 1
lineage3 12
lineage4.3 1
lineage4.9 24
La1 2
lineage4.3.1 1
lineage4 3
lineage6.1.1 3
lineage4.6.2.2 3
lineage4.8 10
lineage4.1.2.1.1 1
lineage4.3.2 2
lineage4.5 2
lineage1.1.1 1
lineage1.1.2 3
La1.6 3
lineage3.1.2.2;lineage3.1.2.1 1
lineage4.6.1.1 2
lineage2.2.2 1
lineage2 1
lineage2.2.1.1 2
La1.7.1 6
La1.8.2 1
La1.7 1
lineage3.1.2.2 1
lineage4.8.2 1
lineage4.1.1 3
lineage1.2.2.2 4
lineage4.4.1.2 2
lineage1.1.3.1 3
lineage3;lineage2.1 1
lineage4.1 1
lineage4.1.1.3 3
lineage4.7 1
lineage3.1.2.1 2
lineage4;lineage3 1
lineage3.1.3 1
lineage1.1.1.1 1
lineage4;lineage1.1 1
lineage4.2.2.2 1
lineage4.3.1.1 1
lineage4.1.1.2 1
lineage4.1.1.3.1 1
spoligotype Counts
spoligotype Count
None 267
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045381 Sensitive lineage3.1.2 None
SRR6325442 HR-TB None
SRR6046362 HR-TB None
SRR6325444 HR-TB None
ERR278594 HR-TB None
SRR6046482 HR-TB None
SRR6046460 HR-TB None
SRR6046530 Pre-XDR-TB lineage2.2.1 None
SRR6046514 HR-TB None
SRR6325448 HR-TB None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6325447 HR-TB None
SRR6046824 HR-TB None
SRR6046848 Other lineage4.6.5 None
ERR323036 HR-TB None
SRR6397654 HR-TB lineage4.1.2.1 None
ERR3077950 MDR-TB lineage3.1.1 None
ERR294248 HR-TB None
SRR6896411 MDR-TB lineage4.1.2 None
SRR6981920 Sensitive lineage4.3.4.2.1 None
ERR3077978 Other lineage1.1 None
SRR6982090 RR-TB lineage4.4.1.1 None
SRR6982113 Sensitive lineage4.1.2.1 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6982467 Other lineage2.2.1 None
ERR323034 HR-TB lineage3.1 None
ERR5311090 HR-TB None
ERR502524 HR-TB La2 None
ERR502889 Other None
ERR5311081 HR-TB None
ERR5165803 Sensitive lineage4.3.3 None
ERR5311099 HR-TB None
SRR8073662 Other La1.8.1 None
SRR6982510 Sensitive lineage4;lineage2 None
SRR8065072 Sensitive La1.1 None
SRR8073675 Other La1.8.1 None
ERR323045 HR-TB None
ERR323039 HR-TB None
ERR323038 HR-TB None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323041 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323055 HR-TB None
ERR323053 HR-TB None
ERR1063859 HR-TB None
ERR323063 HR-TB None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR10430711 Sensitive La2 None
ERR023749 Sensitive lineage3 None
ERR067681 HR-TB None
ERR133986 HR-TB None
ERR3588243 Sensitive lineage4.3 None
ERR144568 Pre-XDR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3439432 Other None
ERR3283010 Other La1 None
ERR3283017 HR-TB None
ERR3283021 HR-TB None
ERR3468544 HR-TB None
ERR405210 Sensitive lineage4.3.1 None
ERR3797047 HR-TB lineage4 None
ERR403298 HR-TB lineage4 None
ERR3797016 HR-TB None
ERR3797023 HR-TB La1.8.1 None
ERR3797083 HR-TB None
ERR3799304 Other lineage6.1.1 None
ERR4188350 HR-TB None
ERR568778 HR-TB lineage4.6.2.2 None
ERR4407457 Sensitive lineage3.1.1 None
ERR4407520 Sensitive lineage4.8 None
ERR4407543 Sensitive lineage2.2.1 None
ERR4798504 Other lineage3 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4407530 HR-TB lineage4.1.2.1 None
ERR4798406 HR-TB None
ERR6358837 HR-TB None
ERR5908228 Other lineage4.3.3 None
ERR773806 Sensitive lineage2.2.1 None
ERR736865 HR-TB None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR772255 MDR-TB lineage4.3.2 None
ERR9117731 HR-TB lineage4.6.2.2 None
ERR775807 Sensitive lineage4.5 None
ERR775802 MDR-TB lineage1.1.1 None
ERR779654 Sensitive lineage4.3.4.2.1 None
ERR8976043 HR-TB None
ERR9787014 Other lineage6.1.1 None
ERR9119096 Other lineage4.3.3 None
ERR9117796 Sensitive lineage4.8 None
ERR9117822 Sensitive lineage4.1.2.1 None
ERR9117833 Sensitive lineage3 None
ERR9657179 Other lineage1.1.2 None
SRR10993948 Other La1.6 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR987733 RR-TB lineage4.6.1.1 None
ERR9892003 Sensitive lineage4.6.2.2 None
SRR069981 HR-TB lineage2.2.2 None
SRR10272574 Sensitive lineage4.4.1.1 None
ERR987722 HR-TB None
SRR069989 HR-TB lineage2 None
SRR10993940 Other La1.6 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR11294527 HR-TB La1 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR10993953 Other La1.6 None
SRR11462934 Other La1.8.1 None
SRR1162740 Other lineage4.1.2.1 None
SRR1172310 HR-TB None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1165423 Other lineage4.1.2.1 None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1173453 Other lineage4.4.1.1 None
SRR1180270 Other lineage2.2.1 None
SRR1174897 HR-TB None
SRR11871418 Pre-XDR-TB lineage2.2.1 None
SRR11972370 MDR-TB lineage2.2.1.1 None
SRR11972399 MDR-TB lineage2.2.1 None
SRR13199738 Other La1.7.1 None
SRR11972458 Sensitive lineage1.1.2 None
SRR13423544 Other lineage4.5 None
SRR13861261 Sensitive lineage4.9 None
SRR13837566 Other lineage4.9 None
SRR13837630 Sensitive lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR13861288 Other lineage4.9 None
SRR13861305 Other lineage4.9 None
SRR13861372 Other lineage4.9 None
SRR13861304 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR13861413 Sensitive lineage4.9 None
SRR13861381 MDR-TB lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861424 RR-TB lineage4.9 None
SRR13861434 RR-TB lineage4.9 None
SRR13861415 Other lineage4.9 None
SRR13861553 Sensitive lineage4.9 None
SRR13861549 RR-TB lineage4.9 None
SRR15296920 HR-TB La1.7.1 None
SRR13861629 RR-TB lineage4.9 None
SRR15296962 Other La1.7.1 None
SRR15296919 Other La1.8.2 None
SRR16156804 RR-TB lineage4.9 None
SRR1791792 Other La1.8.1 None
SRR17156530 Other La1.7 None
SRR17832802 HR-TB lineage3 None
SRR1640750 HR-TB None
SRR17077298 Other La1.7.1 None
SRR1791862 Other La1.8.1 None
SRR1792101 Other La1.7.1 None
SRR1791870 Other La1.7.1 None
SRR1791985 Other La1.8.1 None
SRR18213776 Sensitive lineage2.2.1 None
SRR1792310 Other La1.8.1 None
SRR1792315 Other La1.8.1 None
SRR18213853 Sensitive lineage3.1.2.2 None
SRR18213901 HR-TB lineage3 None
SRR18213974 Sensitive lineage4.8.2 None
SRR2101440 RR-TB lineage4.1.1 None
SRR2101435 Sensitive lineage4.1.2.1 None
SRR18912993 Sensitive lineage4.9 None
SRR2101451 Sensitive lineage2.2.1 None
SRR2101447 Sensitive lineage4.3.4.2.1 None
SRR2101482 MDR-TB lineage4.1.2.1 None
SRR2101590 Sensitive lineage4.1.2 None
SRR2101583 Sensitive lineage4.1.2.1 None
SRR2101637 RR-TB lineage4.4.1.1 None
SRR2101683 HR-TB lineage4.1.2.1 None
SRR2101646 Other lineage2.2.1 None
SRR6650368 Sensitive lineage1.2.2.2 None
SRR21675708 HR-TB lineage4.1.2.1 None
SRR21675855 Sensitive lineage4.1.2.1 None
SRR21676941 Sensitive lineage4.3.3 None
SRR21677071 Sensitive lineage1.2.2.2 None
SRR6650303 Other lineage2.2.1 None
SRR6650428 Sensitive lineage1.2.2.2 None
SRR6650117 Sensitive lineage4.4.1.2 None
SRR6650285 Sensitive lineage4.8 None
SRR6650365 Sensitive lineage2.2.1 None
SRR21675634 Sensitive lineage4.1.1 None
SRR21676316 Sensitive lineage4.3.2 None
SRR21710678 Sensitive lineage4.8 None
SRR6207292 MDR-TB lineage4.1.2 None
SRR6650185 HR-TB lineage1.1.3.1 None
SRR6650302 Sensitive lineage3 None
SRR6650227 Sensitive lineage1.1.3.1 None
SRR6650401 Sensitive lineage1.2.2.2 None
SRR6650366 Sensitive lineage1.1.3.1 None
SRR3675486 HR-TB None
SRR3085279 Sensitive lineage6.1.1 None
SRR3675482 HR-TB None
ERR161034 Other lineage4.3.4.2.1 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
ERR176771 Sensitive None
SRR3675464 HR-TB lineage4.1 None
ERR158583 HR-TB None
ERR161033 HR-TB None
ERR4814874 MDR-TB lineage1.1.2 None
ERR176475 Sensitive lineage4.3.4.2.1 None
ERR4814953 Sensitive lineage4.6.1.1 None
SRR3675558 HR-TB None
SRR3675383 HR-TB None
ERR176740 HR-TB None
SRR3675502 Other None
ERR212001 HR-TB None
ERR4816993 Other lineage4.3.4.2.1 None
SRR3675533 Sensitive lineage3 None
SRR3675545 HR-TB None
SRR3675550 Other None
ERR2229489 HR-TB lineage4.8 None
ERR2229198 MDR-TB lineage4.8 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4817502 Other lineage4.4.1.1 None
SRR4033402 Sensitive lineage2.2.1 None
ERR4818774 Other lineage4.8 None
ERR4818663 Other lineage3 None
ERR2513016 Sensitive lineage4.7 None
ERR234127 Sensitive lineage2.2.1 None
ERR4816919 Sensitive lineage3.1.2.1 None
ERR4818743 Other lineage4.9 None
SRR5073589 HR-TB lineage2.2.1.1 None
ERR2512523 Sensitive lineage3.1.2.1 None
SRR5007163 MDR-TB lineage4;lineage3 None
ERR2503361 Sensitive lineage4.1.2.1 None
ERR2509673 Other lineage2.2.1 None
ERR2509681 Sensitive lineage2.2.1 None
ERR2512524 Sensitive lineage4.8 None
ERR3275196 Other lineage2.2.1 nl
ERR4818310 Sensitive lineage4.4.1.2 None
ERR4818490 Sensitive lineage4.8 None
ERR4818507 RR-TB lineage4.1.2.1 None
ERR2512766 Other lineage3.1.3 None
ERR4818952 Other lineage3 None
ERR4818619 Sensitive lineage3 None
SRR5067548 Other lineage1.1.1.1 None
SRR5007180 Other None
SRR5341418 Other None
ERR4819322 Other lineage4;lineage1.1 None
ERR4820369 Other lineage2.2.1 None
ERR4820221 Other lineage4.8 None
ERR4819935 Sensitive lineage4.9 None
SRR5341259 Other lineage2.2.1 None
SRR5341218 MDR-TB lineage4.3.3 None
ERR1023509 Other None
ERR2446563 Other lineage2.2.1 nl
ERR2514881 HR-TB lineage4.3.3 None
ERR233352 Sensitive lineage4.1.2.1 None
SRR5341330 HR-TB None
SRR5341470 HR-TB None
ERR4821053 Other lineage3 None
SRR5657424 Other La1.8.1 None
ERR2693239 HR-TB None
SRR6045464 Other lineage4.1.1.3 None
SRR5657441 Other La1.8.1 None
SRR6045932 MDR-TB lineage4.2.2.2 None
SRR20139566 RR-TB lineage4.1.2.1 None
ERR4821362 Sensitive lineage2.2.1 None
ERR4821675 Sensitive lineage4.9 None
SRR6045603 RR-TB lineage4.1.1.3 None
ERR4821240 Sensitive lineage3 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6045805 Other lineage4.3.1.1 None
SRR6045860 Sensitive lineage4.1.1.2 None
SRR6044835 Sensitive lineage4 None
SRR6044916 Other lineage4.1.1 None
SRR6045952 HR-TB None
SRR6045163 Other lineage2.2.1 None
SRR6045249 Pre-XDR-TB lineage4.1.1.3.1 None