Rv0006 - c.-551G>C


Drug resistance types
33 Sensitive 4 RR-TB 56 HR-TB 16 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 145 Other
lineage Counts
lineage Count
lineage4.9 76
La3;lineage2.1;lineage6.3 1
La1.7;lineage4.9 9
21
lineage4.9;lineage6.3 8
lineage6.3.1 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage4.9 14
M.canetti;lineage2.1;lineage4.9 2
lineage2.2 1
lineage2.1;lineage4.9;lineage6.3 9
lineage2.2.1 11
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage4.9;lineage9 2
lineage2.2.1;lineage6.3 1
lineage4.2.2.2 1
La3;lineage4.9 9
lineage3 2
lineage4.1.1.1 1
lineage4 3
lineage1.2.2.2 1
lineage4.3.3 2
lineage4.3.4.1 1
La1;lineage4.9 2
lineage4.1.3 2
M.canetti;lineage4.9 2
lineage4.4.1.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.4 1
lineage4.1.2.1 7
lineage2.1 5
lineage4.3.2;lineage4.9 1
La1.7;M.canetti;lineage4.9 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.2.BCG;La1.8.1 1
lineage4.8 1
lineage4.7 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage3.1.2.2 1
lineage2.2.1.2 1
La3;lineage2 1
La3;lineage4 1
La3;lineage2.2.1 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage2.1;lineage6.3 2
La1.7.1 1
lineage4.1.2 1
La3;M.canetti;lineage4.9 1
La2;lineage4.9 1
La1.7 2
lineage1.2.1.1 1
lineage4.1.1.2 1
lineage3.1.2.2 1
La1;lineage2;lineage4.9 1
lineage4.1.1.3 2
La3 2
lineage1.1.3.1 1
lineage1.2.1.2 1
lineage4.8.1 1
lineage3.1 1
lineage4.6.2.2 1
La1.7;lineage4.2 1
lineage2.2.1.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage4.1 1
lineage4.6.1.1 1
La3;lineage4.8 2
La3;M.canetti;lineage2.2.1 1
lineage1.1.2 2
La3;lineage1.1.2 1
lineage2.2.1;lineage3 1
lineage4.3.2.1 1
lineage4.3.2 1
La2;lineage4.9;lineage9 1
La1;lineage4.1.2 1
M.canetti;lineage2.1;lineage6.3 1
La1.7;lineage4.9;lineage7 1
lineage4.6.3;lineage4.9 1
spoligotype Counts
spoligotype Count
None 262
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1172951 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR137286 Other lineage4.9 None
SRR29097026 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR5341373 Other lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9787139 Other lineage6.3.1 None
ERR1063896 Sensitive None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR6358979 Other lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4815604 Other None
SRR10809074 Sensitive lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR502510 Sensitive lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR1173384 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4821655 HR-TB lineage4.9 None
ERR2513470 Other lineage4.2.2.2 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR6511621 Sensitive lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR751326 Other lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283044 Other lineage4 None
ERR4797201 Other lineage1.2.2.2 None
ERR4817731 HR-TB lineage4.9 None
SRR30296339 Sensitive lineage4.3.3 None
SRR28119777 Other lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR12416842 HR-TB lineage4.9 None
ERR6866639 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR6785527 Sensitive lineage2.2.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173400 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR473332 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR779852 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR5341469 HR-TB lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
ERR987722 MDR-TB None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
SRR19295647 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR1173633 Other lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786569 Other lineage4.8 None
SRR6046611 Sensitive lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR11043824 Sensitive lineage4.7 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
SRR20969677 HR-TB La3;lineage2 None
ERR3283028 Other La3;lineage4 None
SRR1710057 Other lineage2.1 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR3416776 Other lineage2.1 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496517 Other None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR702405 Sensitive lineage4.9 None
ERR13285068 Sensitive lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR4830353 Other La1.7 None
ERR323115 Sensitive lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675267 Other La1.7;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
SRR3675461 RR-TB lineage4.9 None
SRR6789626 Other None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR29096150 Other lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR11465025 Other lineage4.1.1.3 None
ERR108471 HR-TB lineage4.9 None
SRR7535086 Other None
ERR4800341 Other lineage3 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR3797064 Other La3;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR7131243 HR-TB lineage1.2.1.2 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR3675488 Other La1.7;lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6045892 Sensitive lineage4.9 None
SRR26399265 Other lineage2.2.1 None
SRR1184294 Other lineage4.9 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR4796929 Sensitive lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR25827682 Other None
SRR6789621 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180226 HR-TB lineage4.9 None
SRR1184372 MDR-TB None
ERR9786440 Other lineage4.1 None
SRR1173363 Other None
ERR4815752 Other lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR323062 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323066 Sensitive lineage4.9 None
SRR3675222 Other La1.7 None
SRR1196583 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR29016780 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR4817893 Other La3;lineage4.8 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR502511 Sensitive lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR3797069 Other lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR1173355 Other lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR5341400 Sensitive lineage4.9 None
ERR323107 Sensitive lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR4816999 Other None
ERR4769474 HR-TB lineage4.9 None
ERR124636 Sensitive lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4815441 HR-TB lineage4.9 None
SRR3675236 Other None
ERR9117805 Other lineage4.3.2 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1165699 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4819877 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR1035122 Sensitive lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR9117709 Other None
SRR3675549 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
ERR4797193 HR-TB lineage1.1.2 None
SRR1172234 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR12015083 Other La3;lineage4.8 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675311 Other lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR1173118 Other lineage2.2.1 None
SRR1172857 Other None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR234659 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR9786671 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None