SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR28044692
|
Sensitive
|
lineage1.1.2
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR4799989
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR3675482
|
Other
|
lineage4.9
|
None
|
ERR8665994
|
Other
|
lineage4.9
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR1167055
|
Other
|
lineage4.1.2.1
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
SRR29050859
|
Other
|
lineage4.9
|
None
|
ERR4816470
|
HR-TB
|
lineage3
|
None
|
SRR21733287
|
Sensitive
|
lineage1.1.2
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR212138
|
HR-TB
|
lineage4.9
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
SRR1165423
|
RR-TB
|
lineage4.1.2.1
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR10315551
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR13285068
|
Sensitive
|
lineage4.9
|
None
|
SRR1162740
|
Other
|
lineage4.1.2.1
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
ERR13261981
|
Sensitive
|
lineage4.3.3
|
None
|
SRR1169249
|
Other
|
lineage4.9
|
None
|
SRR16156775
|
Other
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR1169306
|
Other
|
La3;lineage4.9
|
None
|
SRR1180148
|
Sensitive
|
lineage4.9
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
ERR5917710
|
Other
|
lineage4.1.2.1
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1173767
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR11465511
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR11465510
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR14066533
|
Sensitive
|
lineage1.1.1
|
None
|
SRR28351589
|
Sensitive
|
lineage4.3.3
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675487
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR3675510
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR7821126
|
Sensitive
|
lineage1.1.3.2
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR1791696
|
Other
|
La1.8.1
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR11465509
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
SRR6046594
|
Sensitive
|
lineage4.9
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11972367
|
Sensitive
|
lineage2.2.1
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2509673
|
Other
|
lineage2.2.1
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|