lineage | Count |
---|---|
lineage4.3.4.2.1 | 1 |
lineage4.9 | 14 |
lineage4 | 54 |
lineage4.1.1.3 | 1 |
118 | |
La1.8.1 | 4 |
lineage4.1.2.1 | 8 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage2 | 3 |
lineage2.2.1 | 6 |
lineage2.2.1.2 | 1 |
lineage3 | 3 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 2 |
lineage1.1.2 | 1 |
lineage4.1 | 2 |
lineage4.8 | 2 |
lineage4.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage2.2.1.1 | 1 |
lineage3.1 | 3 |
lineage1.1.3.2 | 1 |
lineage4.5 | 1 |
lineage2.2 | 2 |
lineage4.9;La3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.2.1 | 2 |
spoligotype | Count |
---|---|
None | 238 |
ID | Drug resistance | Lineage | Country iso2 | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283032 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283036 | HR-TB | None | ERR5336148 | Other | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR3797021 | Other | La1.8.1 | None | ERR3797058 | Other | lineage4.9 | None | ERR400326 | Sensitive | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400345 | Other | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4810741 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4811022 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR702404 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR736839 | Other | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR8976043 | HR-TB | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1172817 | HR-TB | None | ERR9787197 | Other | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12882241 | Sensitive | lineage1.1.3.2 | None | SRR12416824 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR4815604 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675279 | Other | None | SRR3675236 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675311 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675510 | Other | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675522 | Other | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675558 | HR-TB | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675572 | Other | None | ERR212123 | Other | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4817998 | Other | lineage3 | None | SRR7496472 | Other | None | SRR5341396 | Other | lineage4 | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | ERR1035138 | MDR-TB | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693230 | Other | None | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693254 | Other | None | SRR6046133 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | ERR323036 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6325442 | HR-TB | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6789626 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502943 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR8217918 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR027293 | Other | None |
---|