EBG00000313339 - n.3093T>C
Drug resistance types
13 Sensitive
4 RR-TB
46 HR-TB
14 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 40 |
| lineage4.9;lineage6.3 | 8 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.6.3;lineage4.9 | 2 |
| 7 | |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.2.1 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4 | 1 |
| La2;lineage4.9 | 2 |
| lineage2.2 | 4 |
| La1.7.1;lineage4.9 | 1 |
| La3 | 2 |
| lineage2.1 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 2 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.9;lineage9 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;lineage2.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 148 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172234 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR176751 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1173363 | Other | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR702406 | Other | lineage2.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1172951 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR6358979 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | ERR108471 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR20970016 | Other | lineage2.2 | None | ERR987722 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1165699 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR1172817 | Other | La3 | None |
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