EBG00000313339 - n.3093T>C


Drug resistance types
13 Sensitive 4 RR-TB 46 HR-TB 14 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 69 Other
lineage Counts
lineage Count
lineage4.9 40
lineage4.9;lineage6.3 8
lineage4.2;lineage4.8.1;lineage4.9 1
La3;lineage4.9 8
lineage4.6.3;lineage4.9 2
7
lineage2.1;lineage4.9;lineage6.3 5
lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.2.1.2;lineage7 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1.2 1
lineage2.1;lineage4.9 5
lineage2.2.1 5
M.canetti;lineage2.1;lineage4.9 2
lineage4 1
La2;lineage4.9 2
lineage2.2 4
La1.7.1;lineage4.9 1
La3 2
lineage2.1 2
La1;lineage4.1.2 1
lineage3.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.2.1.1 2
La1.2.BCG 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.2;lineage4 1
La1.7;M.canetti;lineage4.9 1
lineage4.1.1.1 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7;lineage4.9;lineage6 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2 1
La3;lineage2.1;lineage4.9 2
La2;lineage2.2 1
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage4.9;lineage9 2
lineage2.2.1;lineage6.3 1
lineage3.1.2.2 1
La1;lineage4.9 2
lineage4.2.1 1
lineage1.1.3.1 1
lineage4.4.1.2 1
lineage1.1.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage3.1.3 1
lineage4.3.4.2.1 1
lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage3.1.2.1;lineage3.1.2.2 1
La3;lineage2.2.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4.3.3 1
lineage1;lineage4.9 1
La1.7;lineage3.1;lineage4 1
La1;lineage2;lineage4.9 1
La2;lineage4.9;lineage9 1
spoligotype Counts
spoligotype Count
None 148
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1172234 Other lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR176751 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR9787197 Other None
SRR6789621 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1180226 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR1173363 Other None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR5535933 Other lineage4.9 None
SRR6045053 Other lineage4 None
ERR323039 HR-TB La2;lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR6866410 Sensitive lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR3283021 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1172728 RR-TB La3 None
ERR702406 Other lineage2.1 None
SRR1173400 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4798262 HR-TB La1.2.BCG None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR1184381 MDR-TB None
SRR1172857 Other None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR12142341 HR-TB lineage2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1184372 MDR-TB None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1172951 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR3283040 HR-TB lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR20969677 HR-TB La3;lineage2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR6358979 Other lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR323107 Sensitive lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR1063846 HR-TB lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR176793 Other lineage4.1.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7535086 Other None
ERR108471 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3797064 Other La3;lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR1180172 Other lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR4797193 HR-TB lineage1.1.2 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR779852 Sensitive lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
SRR20970016 Other lineage2.2 None
ERR987722 MDR-TB None
SRR28119805 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR4810624 MDR-TB lineage2.2 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR20969708 HR-TB lineage2.2 None
SRR1173218 Other lineage4.3.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR3283011 Other La3;lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1165699 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR1172817 Other La3 None