Rv0006 - c.-662A>C


Drug resistance types
55 Sensitive 5 RR-TB 82 HR-TB 20 MDR-TB 3 Pre-XDR-TB 0 XDR-TB 68 Other
lineage Counts
lineage Count
M.canetti;lineage4.9 6
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 3
lineage4.2;lineage4.9 3
lineage4.9 103
lineage2.2.1 3
lineage4.9;lineage7 5
La1.7;M.canetti;lineage4.9 5
La3;lineage4.9 10
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 10
La3;lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage4.5 3
La1.7;lineage4.9 10
lineage4.6.3;lineage4.9 1
lineage2.2.2 1
La1.8.1 1
La1.7.1;La1.7.X-unk4 1
lineage4.2;lineage4.8.1;lineage4.9 2
M.canetti;lineage1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.3.4.1 2
lineage1.1.3.1 1
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
2
lineage3 1
La1;lineage4.9 1
lineage4.1;lineage4.8 2
La1.7.1 1
La1.6;lineage4 1
lineage1;lineage4.9 2
lineage2.2.1.2 1
M.canetti;lineage4.9;lineage9 1
La3;lineage4 1
La1.7.X-unk4;lineage4.9 1
La2;lineage2.2 1
lineage4.1.2 1
lineage2.2 3
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.7 1
lineage2.1;lineage4.9 2
La2;lineage4.9 1
lineage4.3.2.1 2
lineage4.9;lineage9 1
M.canetti;lineage2.1 1
lineage1.1.1 1
lineage4 3
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9;lineage7 1
lineage4.9;lineage6.1.3 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.3.4 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.8 1
La1.7;lineage3.1;lineage4 1
M.canetti;lineage2.1;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.7.1;lineage4.9 1
lineage4.1.2.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1;lineage4.1.2 1
spoligotype Counts
spoligotype Count
None 233
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045233 Other M.canetti;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR363456 Sensitive lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819422 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
ERR2693252 Sensitive lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR369151 Other lineage4.9 None
SRR20969955 Other lineage4.5 None
SRR3675501 Other La1.7;lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR6358979 Other lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR3283030 HR-TB lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR3797019 Other La1.8.1 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR11465151 Sensitive lineage4.3.4.1 None
ERR176779 HR-TB lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473332 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR29096174 Sensitive La1.7;lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR9786843 Other None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR181824 HR-TB lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR7240492 HR-TB La1.7.1 None
SRR6046382 Sensitive lineage2.2.1 None
SRR28351554 Sensitive La1.6;lineage4 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
ERR6866807 Other lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR176651 Other lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR363453 Sensitive lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR387051 Other lineage4.9 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR3283028 Other La3;lineage4 None
ERR1063896 Sensitive None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR8665994 Other lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
SRR20969708 HR-TB lineage2.2 None
ERR3797048 Other La3;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR4830353 Other La1.7 None
ERR323115 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR373945 Sensitive lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR1063846 HR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6511621 Sensitive lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
ERR176751 Other lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR28351339 MDR-TB lineage4 None
ERR212033 Other lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR369156 Sensitive lineage4.9 None
ERR3797079 Sensitive lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR349330 Sensitive lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6045503 Sensitive lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR369162 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR736817 HR-TB lineage4.3.4 None
ERR400320 Sensitive lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR3675265 Other lineage4 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR3675522 Other lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR363506 Sensitive lineage4.9 None
ERR736848 Other lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
ERR736856 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR3797015 HR-TB lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR4819051 Sensitive lineage4.9 None
ERR11465152 Sensitive lineage4.3.4.1 None
ERR363474 Sensitive lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR400326 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR3797043 Sensitive lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR14520033 Sensitive lineage4.5 None
ERR4815441 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816478 HR-TB lineage4 None
ERR4816466 HR-TB lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR11465232 Sensitive lineage4.1.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR12416842 HR-TB lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR3675456 RR-TB lineage4.9;lineage7 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR349296 Sensitive lineage4.9 None