EBG00000313339 - n.3089T>C
Drug resistance types
12 Sensitive
5 RR-TB
61 HR-TB
10 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.2.BCG | 2 |
| lineage2.2.1 | 4 |
| lineage4.9 | 67 |
| lineage4.8;lineage4.9 | 2 |
| 3 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.8.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La3;lineage4.9 | 8 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4 | 2 |
| lineage1.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage3.1.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.2 | 1 |
| lineage3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 123 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1915485 | Other | La1.2.BCG | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR137286 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR926165 | Other | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4816478 | HR-TB | lineage4 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR1063896 | HR-TB | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR7535082 | Other | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | ERR990545 | RR-TB | lineage3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1173777 | Sensitive | lineage4.9 | None |
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