EBG00000313325 - n.1003T>G
Drug resistance types
22 Sensitive
8 RR-TB
90 HR-TB
7 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
60 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1 | 1 |
| lineage4 | 32 |
| 63 | |
| lineage3 | 2 |
| lineage4.9 | 34 |
| lineage4.6.2.2 | 1 |
| lineage4.1 | 1 |
| lineage1.1.2 | 1 |
| lineage1.1.1 | 2 |
| lineage4.5 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.2.1.1 | 1 |
| La1.8.1 | 6 |
| lineage4.7 | 1 |
| La2 | 1 |
| lineage2.2.1 | 13 |
| lineage4.4.2 | 3 |
| lineage4.3.4 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4;lineage3.1 | 1 |
| lineage4.4.1.1 | 2 |
| La1.2 | 2 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 1 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1.2 | 3 |
| lineage2.2 | 4 |
| lineage4.8 | 1 |
| lineage3.1.3 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.2.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 197 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675312 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | ERR176740 | HR-TB | None | SRR3675509 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | SRR3675571 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4818929 | HR-TB | None | ERR4818432 | HR-TB | lineage4.5 | gb | SRR5341400 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341330 | HR-TB | None | ERR4819910 | Other | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341456 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR6046210 | Other | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR294266 | HR-TB | None | SRR6046046 | Other | None | SRR6046644 | HR-TB | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR323053 | HR-TB | None | ERR5087623 | Other | La1.8.1 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | ERR323045 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323039 | HR-TB | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063859 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063858 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796597 | Other | lineage4 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3797019 | Other | La1.8.1 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797060 | Other | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797068 | Other | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4188247 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769427 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769517 | Other | La1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798504 | Other | lineage3 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR736856 | HR-TB | lineage4 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR11349143 | Sensitive | lineage4.1.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR18213909 | Other | lineage4.1.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR8692812 | Other | lineage4.9 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692816 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692818 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692855 | Other | lineage4.9 | None | ERR176778 | HR-TB | None | SRR8692871 | Other | lineage4.9 | None | SRR8692888 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692899 | Other | lineage4.9 | None | SRR3675222 | Other | None | SRR3675488 | HR-TB | None | ERR176779 | HR-TB | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675270 | HR-TB | None | ERR1750908 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR1750944 | Other | lineage4.1.2 | za |
|---|
