Rv3596c - c.696C>G
Drug resistance types
50 Sensitive
18 RR-TB
38 HR-TB
22 MDR-TB
7 Pre-XDR-TB
3 XDR-TB
82 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 18 |
| lineage2.2.1.2 | 2 |
| lineage4.9 | 78 |
| lineage4.3.4.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.3.3 | 2 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage1.1.1;lineage4 | 1 |
| lineage3 | 10 |
| lineage5.1.4 | 1 |
| 3 | |
| La1.7;lineage4.9 | 10 |
| lineage4.1.1.3 | 4 |
| La3;lineage4.9 | 6 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.2.1 | 5 |
| La1.7 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2.1 | 6 |
| lineage4.4.1.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.8 | 5 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.2 | 1 |
| lineage5 | 1 |
| lineage3;lineage4 | 1 |
| lineage3.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage2.2 | 4 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2;lineage4 | 1 |
| La1.8.1 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 220 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR176751 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR5341456 | Other | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140716 | Other | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675522 | Other | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817204 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR11662694 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR3675247 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR473332 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR400529 | Other | lineage3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5535933 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4816967 | Other | lineage5 | None | ERR4769450 | Other | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1173185 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR3675222 | Other | La1.7 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1173719 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR2513259 | Other | lineage3 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR3675455 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None |
|---|
