ERR11080916
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828969
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2600542
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864395
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16087930
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163400
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13272794
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088578
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR144567
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR28714178
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539779
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866153
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584649
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
SRR26046695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234658
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR7796665
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044532
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510719
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR5864085
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387490
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827485
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864083
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387492
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911336
|
MDR-TB
|
lineage2.2.1
|
us
|
SRR29539541
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082778
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911405
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR11043586
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043074
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13243557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044260
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864393
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917666
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR2510715
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR11773785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552325
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864080
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28240078
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864398
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866484
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088222
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681364
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397232
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538899
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715201
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798526
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798582
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397131
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307618
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256315
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539796
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864089
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289444
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12916909
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6484997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166909
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046696
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088493
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR027451
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR5266557
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR18714922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26046691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153711
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6485119
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865955
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153814
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7657757
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822378
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044026
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067647
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4830025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3082106
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864392
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046690
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7796666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866485
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284175
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715120
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864082
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865202
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068891
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534314
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR8758891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256084
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11083085
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284174
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832154
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639805
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864394
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02414889
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR5864087
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550670
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02414880
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR13284610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26387465
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046698
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR158616
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SAMEA2534567
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289505
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12916920
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831181
|
MDR-TB
|
lineage2.2.1
|
de
|
SRR6832015
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832224
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864399
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551955
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
SRR18715462
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1162891
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865554
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775767
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8237402
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR4831269
|
MDR-TB
|
lineage2.2.1
|
de
|
SRR5266541
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR6832334
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865921
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR4829384
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR26046697
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046692
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356766
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539362
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539746
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539841
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681355
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19050359
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255909
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832348
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046693
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26387488
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639804
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5266551
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR4830746
|
MDR-TB
|
lineage2.2.1
|
ir
|
ERR5864078
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
ERR5866228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430378
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830062
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865494
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866152
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829845
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR11043108
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256251
|
RR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR5864079
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284001
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865158
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827866
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864086
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12916922
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6257009
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR6256970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041760
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR228062
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR2510655
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR10397145
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387466
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829704
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR5865157
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043364
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552326
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677414
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR11080967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5266544
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR26387468
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26046694
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29356763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13273107
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715461
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR5266534
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR5865155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18714785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163367
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10303352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864396
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26046699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12916919
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888060
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538946
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866535
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284221
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864088
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864397
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715488
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11050155
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773808
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864084
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865201
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387493
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11811370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5152957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23861770
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276249
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866534
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276109
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153093
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10147711
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864081
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864077
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7655790
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866151
|
MDR-TB
|
lineage2.2.1
|
None
|