EBG00000313339 - n.2946G>T
Drug resistance types
8 Sensitive
35 RR-TB
7 HR-TB
24 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 23 |
| lineage3 | 25 |
| lineage4.8 | 12 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2.1 | 16 |
| lineage4.1.3 | 2 |
| lineage4.9 | 24 |
| lineage1.1.3.1 | 3 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.1 | 1 |
| lineage5 | 2 |
| lineage2.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.3 | 1 |
| lineage3.1 | 1 |
| lineage4.3.3 | 4 |
| lineage4.6.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1 | 2 |
| lineage2.2.2 | 4 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8.2 | 1 |
| lineage4.4.1.1 | 6 |
| lineage1.2.2.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4 | 5 |
| lineage3.1.1 | 3 |
| 6 | |
| lineage4.3.4.2.1 | 5 |
| lineage1.1.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.7 | 2 |
| lineage1.1.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.5 | 1 |
| lineage4.9.1 | 1 |
| La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.2 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.8.1 | 1 |
| La1.6 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 188 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4814748 | Other | lineage4.8 | None | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4814714 | Other | lineage3 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815901 | Other | lineage2.2 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816101 | Other | lineage4.1.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR2446070 | Sensitive | lineage4.8 | None | ERR4816493 | Other | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816510 | Other | lineage4.1.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4815811 | HR-TB | lineage4.2.1.1 | None | ERR4818988 | Other | lineage1 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR4818064 | Other | lineage4.8 | None | ERR4817874 | Other | lineage3 | None | ERR4817948 | Other | lineage3 | gb | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4818176 | Other | lineage4.1.2.1 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4818538 | Other | lineage3 | gb | ERR4818904 | Other | lineage4.8 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR4818869 | Other | lineage4.2.2.2 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4819329 | Sensitive | lineage4.6.2.2 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR4820334 | Other | lineage4.4.1.1 | gb | ERR4819414 | Other | lineage1.1.3.1 | gb | ERR4819655 | Other | lineage4.8 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819462 | Other | lineage4 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819525 | Other | lineage3 | None | ERR4819834 | Other | lineage4.8 | gb | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820833 | HR-TB | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820161 | Other | lineage3 | None | ERR4820076 | Other | lineage1.1.1 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821214 | RR-TB | None | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821310 | Other | lineage5 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821341 | Other | lineage4.3.4.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4822200 | Other | lineage4.3.4.1 | gb | SRR6044769 | Other | lineage1.1.2 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6044817 | Other | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6046020 | Other | lineage3 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045267 | RR-TB | lineage4 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046815 | Other | lineage3 | None | SRR6046729 | Other | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982415 | HR-TB | lineage4.9.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR10796589 | Other | lineage4.9 | None | ERR6197022 | Other | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172260 | MDR-TB | lineage4.8.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173740 | Other | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1181161 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | SRR16370329 | HR-TB | lineage4.5 | None | SRR1181250 | Other | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None |
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