EBG00000313339 - n.498G>A
Drug resistance types
3 Sensitive
40 RR-TB
10 HR-TB
40 MDR-TB
24 Pre-XDR-TB
0 XDR-TB
112 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 41 |
| lineage4.2.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.1 | 47 |
| lineage6.3.1 | 1 |
| La1.8.1 | 2 |
| lineage4.3 | 1 |
| lineage4.8 | 8 |
| lineage4.3.3 | 5 |
| lineage4.1.2.1 | 10 |
| lineage2.2.1.1 | 3 |
| lineage4.3.4.2 | 3 |
| lineage4.6.1.1 | 2 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.7 | 3 |
| lineage4.2.1 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4 | 12 |
| lineage4.1.2 | 5 |
| lineage4.1.1 | 1 |
| lineage4.3.4 | 3 |
| lineage1.1.1.1 | 1 |
| lineage4.3.1.1 | 2 |
| lineage1.2.2.2 | 3 |
| lineage1.1.1 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.8;lineage4.3.3 | 2 |
| lineage3 | 15 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| 9 | |
| lineage4.2.2.2 | 2 |
| La2 | 1 |
| lineage4.4 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.2 | 4 |
| lineage2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.6.2.2 | 1 |
| La1.7.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.3 | 1 |
| lineage5 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.8.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 229 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046907 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6397640 | Other | lineage4.2.1.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR502523 | Other | lineage6.3.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131075 | Other | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR4188197 | Other | La1.8.1 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796627 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796634 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR10796615 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796635 | Other | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR5863912 | MDR-TB | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117823 | Other | lineage1.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1173170 | Other | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173834 | Other | lineage4.6.1.1 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1181161 | Other | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156832 | RR-TB | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR19303899 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None | SRR19325559 | Sensitive | lineage4.3.2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR19303907 | Other | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048352 | Sensitive | lineage4.2.2.2 | None | ERR551176 | HR-TB | lineage4.3.4 | None | SRR21469200 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675513 | Other | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817310 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4817435 | Other | lineage1.1.3.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4820503 | Other | lineage2.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR1023509 | Other | None | ERR4819862 | Sensitive | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821812 | Other | lineage4.8 | gb | SRR6046117 | RR-TB | lineage4.9 | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6046087 | Other | None | SRR5550936 | MDR-TB | lineage2.2.1.1 | pg | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821310 | Other | lineage5 | None | ERR4821550 | Other | lineage2.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045600 | Other | lineage3.1.2 | gb | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045178 | Other | lineage3 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6044993 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6045986 | Other | lineage3 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6045365 | Other | lineage3 | gb | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6045384 | Other | lineage4.1.2 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046376 | Other | lineage3 | None | SRR6046384 | Other | lineage4.3.1.1 | gb | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046761 | Other | lineage3 | gb | SRR6046839 | Other | lineage4.9 | None |
|---|
