EBG00000313339 - n.40C>T
Drug resistance types
61 Sensitive
6 RR-TB
60 HR-TB
11 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1 | 1 |
| 45 | |
| lineage4.9 | 20 |
| lineage4.2.2.1 | 1 |
| La1.8.1 | 4 |
| La1.7.1 | 1 |
| lineage4.8 | 4 |
| lineage4;lineage2.2 | 1 |
| lineage2.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4 | 64 |
| lineage3.1.3 | 2 |
| lineage1.1.2 | 5 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1 | 4 |
| lineage3 | 4 |
| lineage2.2.1 | 11 |
| lineage4.2.2.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR8692812 | Other | lineage4.9 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692832 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | ERR176779 | HR-TB | None | SRR8692887 | Other | None | ERR176778 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR4815489 | Sensitive | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176651 | HR-TB | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR181887 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819051 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341453 | Sensitive | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341387 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR6045892 | Sensitive | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045894 | Other | lineage4.8 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6046739 | Other | lineage1.1.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6044993 | Other | lineage3 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6046497 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323107 | Other | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR8600204 | Other | La1.8.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323045 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR1034634 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR10465990 | Sensitive | lineage4.1.2.1 | None | ERR137286 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063883 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR387051 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4024991 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | None | ERR4188388 | Other | La1.8.1 | None | ERR4769521 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9119669 | HR-TB | None | SRR10808805 | Sensitive | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR11972367 | Sensitive | lineage2.2.1 | None |
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