lineage | Count |
---|---|
lineage4.3.3 | 6 |
lineage3 | 14 |
lineage2.2.1 | 18 |
lineage4.9 | 22 |
lineage4.3.4.1 | 2 |
lineage3.1.1 | 1 |
lineage1.1.3.1 | 2 |
lineage4.3.4.2 | 1 |
lineage4.1.2.1 | 6 |
8 | |
lineage1.2.2.2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 3 |
lineage3.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4 | 5 |
lineage4.3 | 1 |
lineage4.8 | 7 |
lineage4.7 | 3 |
lineage4.2.1 | 3 |
La1.2 | 1 |
La1.8.1 | 2 |
lineage4.7;lineage4.3.4.2 | 1 |
lineage4.4 | 1 |
La1.4 | 1 |
lineage1.2.1.2 | 1 |
lineage2.2.1.1 | 1 |
lineage1.2.2 | 1 |
lineage3.1.2.1 | 2 |
lineage1.1.2 | 1 |
lineage3.1 | 1 |
lineage4.2.1.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
spoligotype | Count |
---|---|
None | 125 |
ID | Drug resistance | Lineage | Country iso2 | ERR4819093 | Other | lineage4.3.3 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR2513682 | Sensitive | lineage3 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819305 | RR-TB | lineage4.9 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820284 | Other | lineage4.9 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR2515032 | Other | lineage3 | None | ERR4820833 | HR-TB | None | ERR4822104 | RR-TB | lineage3 | None | ERR4820107 | RR-TB | None | ERR4821007 | RR-TB | lineage1.2.2.2 | None | ERR4821214 | RR-TB | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4820192 | Other | La3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046729 | Other | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6044841 | Other | lineage4.9 | None | SRR6046291 | Other | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645929 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR4769418 | Other | La1.2 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR3283053 | Other | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR6197023 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197029 | Other | lineage4.7 | None | SRR16156775 | Other | lineage4.9 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR6197035 | Other | lineage4.7 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4815310 | Other | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814623 | Other | lineage4.8 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815550 | Other | lineage4 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4816009 | Other | lineage1.1.2 | None | ERR4816982 | Other | lineage4 | None | ERR4817069 | RR-TB | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR4816756 | RR-TB | None | ERR4817131 | Pre-XDR-TB | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817127 | Other | lineage4.1.2.1 | None | ERR2229233 | Sensitive | lineage4 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4815811 | HR-TB | lineage4.2.1.1 | None | ERR4817310 | Other | lineage4.9 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR2509886 | RR-TB | lineage3 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None |
---|