lineage | Count |
---|---|
lineage4 | 4 |
lineage4.9 | 37 |
lineage4.9;La1.3 | 1 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.3.4.2.1 | 4 |
lineage3 | 10 |
lineage2.2.1 | 12 |
lineage4.3.3 | 3 |
lineage4.1.2.1 | 4 |
7 | |
La1.8.1 | 1 |
lineage2.2.2 | 1 |
lineage4.8 | 2 |
lineage3.1.2 | 1 |
lineage1.2.2 | 1 |
lineage3.1.2.1 | 1 |
lineage4.1 | 1 |
lineage3.1 | 1 |
lineage4.3.4.2 | 2 |
lineage1.1.2 | 1 |
lineage6 | 1 |
lineage1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.1.3 | 1 |
lineage4.2.2.2 | 1 |
lineage3.1.1 | 1 |
lineage5.1.1 | 1 |
lineage4.2.1 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 108 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797065 | MDR-TB | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | ERR6197040 | Other | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1181250 | Other | lineage4.9 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4815310 | Other | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4814841 | Other | lineage4.1 | None | ERR4815550 | Other | lineage4 | None | ERR4814976 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675230 | RR-TB | lineage3 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4815079 | RR-TB | lineage3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816322 | Other | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818393 | RR-TB | lineage3 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819305 | RR-TB | lineage4.9 | None | SRR6044841 | Other | lineage4.9 | None | ERR4820397 | Other | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821264 | Other | lineage1.1.3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820833 | HR-TB | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6896545 | Other | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None |
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