Rv3596c - c.714G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
8 RR-TB
26 HR-TB
16 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 5 |
| lineage4.9 | 42 |
| La1.8.1 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.2 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage3 | 5 |
| 3 | |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.2.2.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.1.1.3 | 4 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage4 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2 | 1 |
| La1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.4.2.1 | 4 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 116 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180137 | Other | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR9786843 | Other | None | ERR212001 | HR-TB | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6358991 | HR-TB | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4816478 | HR-TB | lineage4 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR387051 | Other | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786526 | Other | lineage4.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9896144 | Other | lineage3 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None |
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