Rv0668 - c.1506C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
15 Sensitive
9 RR-TB
35 HR-TB
5 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 2 |
| lineage1.1.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage4.9 | 9 |
| lineage4.9 | 33 |
| lineage2.2.1 | 9 |
| lineage3 | 4 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.4 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 3 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| 1 | |
| La3;lineage4.9 | 1 |
| lineage4.9;lineage7 | 4 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.8.1 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 107 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR16157123 | Other | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675284 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR16156775 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR161037 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None |
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